3J2E Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/N/12:22 | NA | NA |
| 2 | ➜ | 1/N/82:87 | NA | NA |
| 3 | ➜ | 1/N/158:163 | NA | NA |
| 4 | ➜ | 1/N/186:191 | NA | NA |
| 5 | ➜ | 1/N/207:212 | NA | NA |
| 6 | ➜ | 1/N/258:268 | NA | NA |
| 7 | ➜ | 1/N/296:301 | NA | NA |
| 8 | ➜ | 1/N/320:333 | NA | NA |
| 9 | ➜ | 1/N/342:347 | NA | NA |
| 10 | ➜ | 1/N/379:384 | NA | NA |
| 11 | ➜ | 1/N/419:424 | NA | NA |
| 12 | ➜ | 1/N/457:475 | NA | NA |
| 13 | ➜ | 1/N/522:527 | NA | NA |
| 14 | ➜ | 1/N/617:623 | NA | NA |
| 15 | ➜ | 1/N/689:698 | NA | NA |
| 16 | ➜ | 1/N/726:731 | NA | NA |
| 17 | ➜ | 1/N/786:796 | NA | NA |
| 18 | ➜ | 1/N/840:846 | NA | NA |
| 19 | ➜ | 1/N/862:867 | NA | NA |
| 20 | ➜ | 1/N/897:902 | NA | NA |
| 21 | ➜ | 1/N/962:973 | NA | NA |
| 22 | ➜ | 1/N/1012:1017 | NA | NA |
| 23 | ➜ | 1/N/1028:1033 | NA | NA |
| 24 | ➜ | 1/N/1076:1081 | NA | NA |
| 25 | ➜ | 1/N/1089:1096 | NA | NA |
| 26 | ➜ | 1/N/1134:1140 | NA | NA |
| 27 | ➜ | 1/N/1165:1171 | NA | NA |
| 28 | ➜ | 1/N/1265:1270 | NA | NA |
| 29 | ➜ | 1/N/1314:1323 | NA | NA |
| 30 | ➜ | 1/N/1356:1366 | NA | NA |
| 31 | ➜ | 1/N/1449:1454 | NA | NA |
| 32 | ➜ | 1/N/1515:1520 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/N/30:32,1/N/552:553 | NA | NA |
| 2 | ➜ | 1/N/44:45,1/N/396:398 | NA | NA |
| 3 | ➜ | 1/N/47:52,1/N/359:361 | NA | NA |
| 4 | ➜ | 1/N/54:56,1/N/356:357 | NA | NA |
| 5 | ➜ | 1/N/61:63,1/N/104:106 | NA | NA |
| 6 | ➜ | 1/N/63:66,1/N/103:104 | NA | NA |
| 7 | ➜ | 1/N/67:69,1/N/99:102 | NA | NA |
| 8 | ➜ | 1/N/70:73,1/N/97:98 | NA | NA |
| 9 | ➜ | 1/N/74:82,1/N/87:96 | NA | NA |
| 10 | ➜ | 1/N/128:136,1/N/227:233 | NA | NA |
| 11 | ➜ | 1/N/144:146,1/N/176:178 | NA | NA |
| 12 | ➜ | 1/N/147:153,1/N/168:175 | NA | NA |
| 13 | ➜ | 1/N/200:202,1/N/215:217 | NA | NA |
| 14 | ➜ | 1/N/202:206,1/N/213:215 | NA | NA |
| 15 | ➜ | 1/N/242:247,1/N/277:284 | NA | NA |
| 16 | ➜ | 1/N/249:253,1/N/273:275 | NA | NA |
| 17 | ➜ | 1/N/292:293,1/N/304:308 | NA | NA |
| 18 | ➜ | 1/N/293:295,1/N/302:304 | NA | NA |
| 19 | ➜ | 1/N/367:369,1/N/392:393 | NA | NA |
| 20 | ➜ | 1/N/369:375,1/N/389:392 | NA | NA |
| 21 | ➜ | 1/N/375:376,1/N/387:389 | NA | NA |
| 22 | ➜ | 1/N/408:416,1/N/427:434 | NA | NA |
| 23 | ➜ | 1/N/440:442,1/N/492:497 | NA | NA |
| 24 | ➜ | 1/N/446:450,1/N/483:488 | NA | NA |
| 25 | ➜ | 1/N/450:455,1/N/477:483 | NA | NA |
| 26 | ➜ | 1/N/504:511,1/N/540:541 | NA | NA |
| 27 | ➜ | 1/N/515:521,1/N/528:536 | NA | NA |
| 28 | ➜ | 1/N/568:575,1/N/880:882 | NA | NA |
| 29 | ➜ | 1/N/580:584,1/N/757:761 | NA | NA |
| 30 | ➜ | 1/N/594:596,1/N/644:645 | NA | NA |
| 31 | ➜ | 1/N/597:598,1/N/640:643 | NA | NA |
| 32 | ➜ | 1/N/605:613,1/N/627:633 | NA | NA |
| 33 | ➜ | 1/N/654:655,1/N/751:754 | NA | NA |
| 34 | ➜ | 1/N/658:659,1/N/746:748 | NA | NA |
| 35 | ➜ | 1/N/662:666,1/N/740:743 | NA | NA |
| 36 | ➜ | 1/N/673:677,1/N/713:717 | NA | NA |
| 37 | ➜ | 1/N/684:688,1/N/699:706 | NA | NA |
| 38 | ➜ | 1/N/773:779,1/N/803:806 | NA | NA |
| 39 | ➜ | 1/N/779:783,1/N/799:803 | NA | NA |
| 40 | ➜ | 1/N/831:833,1/N/853:855 | NA | NA |
| 41 | ➜ | 1/N/887:894,1/N/905:910 | NA | NA |
| 42 | ➜ | 1/N/924:927,1/N/1390:1392 | NA | NA |
| 43 | ➜ | 1/N/933:935,1/N/1380:1384 | NA | NA |
| 44 | ➜ | 1/N/951:954,1/N/1226:1230 | NA | NA |
| 45 | ➜ | 1/N/993:997,1/N/1044:1045 | NA | NA |
| 46 | ➜ | 1/N/998:999,1/N/1041:1043 | NA | NA |
| 47 | ➜ | 1/N/1006:1009,1/N/1020:1023 | NA | NA |
| 48 | ➜ | 1/N/1048:1050,1/N/1208:1209 | NA | NA |
| 49 | ➜ | 1/N/1052:1056,1/N/1204:1206 | NA | NA |
| 50 | ➜ | 1/N/1057:1058,1/N/1199:1203 | NA | NA |
| 51 | ➜ | 1/N/1060:1061,1/N/1195:1197 | NA | NA |
| 52 | ➜ | 1/N/1114:1116,1/N/1184:1186 | NA | NA |
| 53 | ➜ | 1/N/1124:1128,1/N/1144:1149 | NA | NA |
| 54 | ➜ | 1/N/1129:1132,1/N/1142:1143 | NA | NA |
| 55 | ➜ | 1/N/1158:1162,1/N/1174:1181 | NA | NA |
| 56 | ➜ | 1/N/1247:1253,1/N/1284:1290 | NA | NA |
| 57 | ➜ | 1/N/1255:1258,1/N/1277:1282 | NA | NA |
| 58 | ➜ | 1/N/1259:1263,1/N/1272:1276 | NA | NA |
| 59 | ➜ | 1/N/1303:1308,1/N/1329:1334 | NA | NA |
| 60 | ➜ | 1/N/1399:1401,1/N/1501:1504 | NA | NA |
| 61 | ➜ | 1/N/1401:1404,1/N/1497:1501 | NA | NA |
| 62 | ➜ | 1/N/1405:1409,1/N/1491:1496 | NA | NA |
| 63 | ➜ | 1/N/1412:1414,1/N/1486:1488 | NA | NA |
| 64 | ➜ | 1/N/1414:1416,1/N/1484:1486 | NA | NA |
| 65 | ➜ | 1/N/1416:1419,1/N/1481:1484 | NA | NA |
| 66 | ➜ | 1/N/1430:1435,1/N/1466:1470 | NA | NA |
| 67 | ➜ | 1/N/1440:1442,1/N/1460:1461 | NA | NA |
| 68 | ➜ | 1/N/1444:1448,1/N/1455:1458 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/N/585:588,1/N/651:654,1/N/754:756 | NA | NA |
| 2 | ➜ | 1/N/826:829,1/N/857:861,1/N/868:874 | NA | NA |
| 3 | ➜ | 1/N/936:939,1/N/1344:1350,1/N/1372:1379 | NA | NA |
| 4 | ➜ | 1/N/954:962,1/N/973:985,1/N/1220:1226 | NA | NA |
| 5 | ➜ | 1/N/990:993,1/N/1045:1047,1/N/1210:1215 | NA | NA |
| 6 | ➜ | 1/N/1003:1006,1/N/1023:1027,1/N/1034:1037 | NA | NA |
| 7 | ➜ | 1/N/1061:1068,1/N/1107:1114,1/N/1186:1195 | NA | NA |
| 8 | ➜ | 1/N/1116:1118,1/N/1155:1158,1/N/1181:1184 | NA | NA |
Problematic loops
No problematic loops
Coloring options: