#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 101-102-94-75-78-9
1 HL_7KVT_0017KVT0.23111BSquash RNA aptamer bound to DFHBI-1T with iridium (III) ionsA23U24A25A26U27A28G30G31U32U33cWWcwW
2 HL_3IVN_0013IVN0.17131APurine riboswitchA21U22G23A24U25A26G28G29U30U31cWWcwWncSs
3 HL_1Y26_0011Y260.11521XPurine riboswitchA30U31G32A33U34A35G37G38U39U40cWWcwWncsSncSs
4 HL_4XNR_0014XNR0.09581XPurine riboswitchA30U31G32A33U34A35G37G38U39U40cWWcwWncSs
5 HL_4LX6_0014LX60.08351APurine riboswitchA30U31G32A33U34A35G37G38U39U40cWWcwWncSs
6 HL_3LA5_0013LA50.00001APurine riboswitchA30U31G32A33U34A35G37G38U39U40cWWcwWncSs
7 HL_5SWD_0045SWD0.07941BPurine riboswitchA30U31G32A33U34A35G37G38U39U40cWWcwWncSs
8 HL_4ATO_0014ATO0.58701GToxI antitoxinU15U16A17C18C19G20A22G23U24A25cWWcwWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAUAUGGUU6
AUAAUAUGGUU1
UUACCGUAGUA1
Non-Watson-Crick part of the motif
SequenceCounts
UGAUAUGGU6
UAAUAUGGU1
UACCGUAGU1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
  • Basepair signature
    cWW-cWW-F-F-F-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.23 | Max 0.63
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