Motif HL_04171.6 Version HL_04171.6 of this group appears in releases 3.88 to 3.93

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	4-7	5-7	8-9
1	HL_4ATO_001	4ATO	0.5870	1	G	ToxI antitoxin	U	15	U	16	A	17	C	18	C	19	G	20	A	22	G	23	U	24	A	25	cWW	cwW			cSH
2	HL_5SWD_004	5SWD	0.0794	1	B	Purine riboswitch	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
3	HL_3LA5_001	3LA5	0.0000	1	A	Purine riboswitch	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
4	HL_4LX6_001	4LX6	0.0835	1	A	Purine riboswitch	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
5	HL_4XNR_001	4XNR	0.0958	1	X	Purine riboswitch	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
6	HL_1Y26_001	1Y26	0.1152	1	X	Purine riboswitch	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW	ncsS	ncSs
7	HL_3IVN_001	3IVN	0.1713	1	A	Purine riboswitch	A	21	U	22	G	23	A	24	U	25	A	26	G	28	G	29	U	30	U	31	cWW	cwW		ncSs
8	HL_7KVT_001	7KVT	0.2311	1	B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	A	23	U	24	A	25	A	26	U	27	A	28	G	30	G	31	U	32	U	33	cWW	cwW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAUAUGGUU	6
UUACCGUAGUA	1
AUAAUAUGGUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAUAUGGU	6
UACCGUAGU	1
UAAUAUGGU	1

Release history

Release	3.88	3.89	3.90	3.91	3.92	3.93
Date	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-cWW-F-F-F-F-F-F
Heat map statistics: Min 0.06 | Avg 0.23 | Max 0.63

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Coloring options: Nucleotide numbers

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