Motif HL_11871.1 Version HL_11871.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8DP3_002 | 8DP3 | 0.2123 | 2 | Mini UNCG | R | RNA (90-MER) | C | 39 | U | 41 | G | 43 | cWW |
2 | HL_8KAH_001 | 8KAH | 0.1592 | 1 | Mini UNCG | I | RNA (65-MER) | C | 55 | A | 57 | G | 58 | cWW |
3 | HL_6JOO_002 | 6JOO | 0.2443 | 1 | Mini UNCG | B | Guide RNA | C | 58 | C | 60 | G | 61 | cWW |
4 | HL_5J7L_204 | 5J7L | 0.2455 | 2 | Mini UNCG | DB | 5S rRNA | G | 86 | C | 88 | C | 90 | cWW |
5 | HL_6MSF_002 | 6MSF | 0.2344 | 2 | Mini UNCG | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
6 | HL_6MSF_001 | 6MSF | 0.2216 | 2 | Mini UNCG | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
7 | HL_2OEU_001 | 2OEU | 0.1885 | 3 | Mini UNCG | A | Hammerhead Ribozyme | C | 15 | U | 19 | G | 20 | cWW |
8 | HL_2F8K_001 | 2F8K | 0.1161 | 1 | Mini UNCG | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW |
9 | HL_5TBW_040 | 5TBW | 0.0985 | 2 | Mini UNCG | 1 | LSU rRNA | C | 1792 | U | 1795 | G | 1796 | cWW |
10 | HL_2QUS_002 | 2QUS | 0.1062 | 3 | Mini UNCG | A | Hammerhead ribozyme | C | 32 | U | 36 | G | 37 | cWW |
11 | HL_2QUW_002 | 2QUW | 0.1610 | 3 | Mini UNCG | B | Hammerhead ribozyme, cleaved fragment | C | 32 | U | 36 | G | 37 | cWW |
12 | HL_5DH6_001 | 5DH6 | 0.1430 | 3 | Mini UNCG | A | hammerhead ribozyme | C | 16 | U | 20 | G | 21 | cWW |
13 | HL_7QR8_002 | 7QR8 | 0.0806 | 1 | Mini UNCG | A | PTPRC sgRNA | C | 55 | A | 57 | G | 58 | cWW |
14 | HL_5VW1_002 | 5VW1 | 0.0749 | 1 | Mini UNCG | C | sgRNA | C | 55 | A | 57 | G | 58 | cWW |
15 | HL_5FQ5_002 | 5FQ5 | 0.0374 | 1 | Mini UNCG | A | SGRNA | C | 55 | A | 57 | G | 58 | cWW |
16 | HL_7QQX_002 | 7QQX | 0.0000 | 1 | Mini UNCG | A | FANCF sgRNA | C | 55 | A | 57 | G | 58 | cWW |
17 | HL_7QR0_002 | 7QR0 | 0.0247 | 1 | Mini UNCG | A | TRAC sgRNA | C | 55 | A | 57 | G | 58 | cWW |
18 | HL_5B2T_002 | 5B2T | 0.0307 | 1 | Mini UNCG | A | Guide RNA | C | 55 | A | 57 | G | 58 | cWW |
19 | HL_4ZT0_005 | 4ZT0 | 0.0622 | 1 | Mini UNCG | D | single-guide RNA | C | 55 | A | 57 | G | 58 | cWW |
20 | HL_7QQP_002 | 7QQP | 0.0502 | 1 | Mini UNCG | A | AAVS1 sgRNA | C | 55 | A | 57 | G | 58 | cWW |
21 | HL_7Z4D_002 | 7Z4D | 0.0746 | 1 | Mini UNCG | A | sgRNA | C | 55 | A | 57 | G | 58 | cWW |
22 | HL_7ZO1_002 | 7ZO1 | 0.0542 | 1 | Mini UNCG | A | CD34 sgRNA | C | 55 | A | 57 | G | 58 | cWW |
23 | HL_6AEG_002 | 6AEG | 0.0728 | 1 | Mini UNCG | A | RNA (95-MER) | C | 55 | A | 57 | G | 58 | cWW |
24 | HL_5J7L_172 | 5J7L | 0.1141 | 1 | Mini UNCG | DA | LSU rRNA | C | 1565 | G | 1567 | G | 1568 | cWW |
25 | HL_8VTW_038 | 8VTW | 0.0785 | 1 | Mini UNCG | 1A | LSU rRNA | C | 1565 | A | 1567 | G | 1568 | cWW |
26 | HL_8KAL_002 | 8KAL | 0.1308 | 1 | Mini UNCG | A | RNA (98-MER) | C | 55 | A | 57 | G | 58 | cWW |
27 | HL_7A0S_039 | 7A0S | 0.1480 | 1 | Mini UNCG | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
28 | HL_5F9R_002 | 5F9R | 0.1337 | 1 | Mini UNCG | A | RNA (116-MER) | C | 73 | A | 75 | G | 76 | cWW |
29 | HL_4WF9_037 | 4WF9 | 0.4490 | 1 | Mini UNCG | X | LSU rRNA | C | 1612 | A | 1614 | G | 1615 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAG | 14 |
CUGAUG | 4 |
GUCAC | 2 |
CAAG | 2 |
CAUUG | 1 |
CUCG | 1 |
GUCUC | 1 |
UUGA | 1 |
CCGUG | 1 |
CAGG | 1 |
CGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UA | 14 |
UGAU | 4 |
UCA | 2 |
AA | 2 |
AUU | 1 |
UC | 1 |
UCU | 1 |
UG | 1 |
CGU | 1 |
AG | 1 |
GA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG (29)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.02 | Avg 0.18 | Max 0.51
Coloring options: