Motif HL_16898.3 Version HL_16898.3 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DH3_003 | 3DH3 | 0.7873 | 1 | F | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW | |
| 2 | HL_3DH3_001 | 3DH3 | 0.7397 | 1 | E | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW | |
| 3 | HL_4LGT_001 | 4LGT | 0.4849 | 1 | E | stem-loop of 23S rRNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW | |
| 4 | HL_5J7L_156 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW | |
| 5 | HL_7RQB_024 | 7RQB | 0.0377 | 2 | 1A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW | |
| 6 | HL_4V9F_025 | 4V9F | 0.0805 | 2 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 878 | cWW | tSW | |
| 7 | HL_6VMY_004 | 6VMY | 0.5597 | 2 | A | Cobalamin riboswitch | C | 287 | C | 288 | A | 290 | G | 291 | G | 293 | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 3 |
| UGAAAGG | 2 |
| UGAAAAG | 1 |
| CCAAGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 3 |
| GAAAG | 2 |
| GAAAA | 1 |
| CAAGC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: