Motif HL_16898.3 Version HL_16898.3 of this group appears in releases 3.54 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_3DH3_003	3DH3	0.7873	1	UNCG	F	stem loop fragment of E. Coli 23S RNA	C	2594	G	2595	G	2597	A	2598	G	2599	cWW	tSW
2	HL_3DH3_001	3DH3	0.7397	1	UNCG	E	stem loop fragment of E. Coli 23S RNA	C	2594	G	2595	G	2597	A	2598	G	2599	cWW	tSW
3	HL_4LGT_001	4LGT	0.4849	1	UNCG	E	stem-loop of 23S rRNA	C	2594	G	2595	G	2597	A	2598	G	2599	cWW	tSW
4	HL_5J7L_156	5J7L	0.0000	2		DA	LSU rRNA	U	779	G	780	A	782	A	783	G	785	cWW	tSW
5	HL_7RQB_024	7RQB	0.0377	2		1A	LSU rRNA	U	779	G	780	A	782	A	783	G	785	cWW	tSW
6	HL_4V9F_025	4V9F	0.0805	2		0	LSU rRNA	U	872	G	873	A	875	A	876	G	878	cWW	tSW
7	HL_6VMY_004	6VMY	0.5597	2		A	Cobalamin riboswitch	C	287	C	288	A	290	G	291	G	293	cWW	ncWH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUGAG	3
UGAAAGG	2
UGAAAAG	1
CCAAGCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUGA	3
GAAAG	2
GAAAA	1
CAAGC	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
UNCG (3)
Basepair signature: cWW-tSW-R
Heat map statistics: Min 0.04 | Avg 0.48 | Max 0.85

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