Motif HL_19870.5 Version HL_19870.5 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_055 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | U | 2633 | U | 2634 | A | 2635 | A | 2636 | C | 2638 | G | 2639 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntSH | tHH | tWW | |
| 2 | HL_4V9F_056 | 4V9F | 0.1037 | 2 | 0 | LSU rRNA | C | 2298 | G | 2299 | A | 2300 | A | 2301 | A | 2303 | G | 2304 | A | 2305 | U | 2306 | A | 2307 | U | 2308 | G | 2310 | cWW | tSH | tHH | tWW | |
| 3 | HL_4WF9_050 | 4WF9 | 0.1203 | 2 | X | LSU rRNA | C | 2291 | U | 2292 | A | 2293 | A | 2294 | A | 2296 | G | 2297 | G | 2298 | U | 2299 | A | 2300 | A | 2301 | G | 2303 | cWW | ntSH | tHH | tWW | |
| 4 | HL_5J7L_187 | 5J7L | 0.1503 | 2 | DA | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | G | 2269 | A | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW | |
| 5 | HL_7RQB_054 | 7RQB | 0.1491 | 2 | 1A | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | A | 2269 | G | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | tHH | tWW | ||
| 6 | HL_7A0S_053 | 7A0S | 0.1837 | 2 | X | LSU rRNA | C | 2243 | C | 2244 | A | 2245 | A | 2246 | A | 2248 | U | 2249 | G | 2250 | U | 2251 | A | 2252 | A | 2253 | G | 2255 | cWW | ntSH | ntHH | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAAAGGUAACG | 2 |
| UUAAACGAUAACG | 1 |
| CGAAAAGAUAUCG | 1 |
| CUAAAGAGUAACG | 1 |
| CCAAAAUGUAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAAAGGUAAC | 2 |
| UAAACGAUAAC | 1 |
| GAAAAGAUAUC | 1 |
| UAAAGAGUAAC | 1 |
| CAAAAUGUAAC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-tHH-tWW-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.11 | Max 0.18
Coloring options: