Motif HL_20743.5 Version HL_20743.5 of this group appears in releases 3.89 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SKI_001 | 3SKI | 0.7722 | 1 | A | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 46 | G | 47 | cWW | ncsS |
| 2 | HL_3SKL_004 | 3SKL | 0.7603 | 1 | B | C | 38 | A | 39 | U | 40 | A | 41 | A | 42 | G | 44 | G | 45 | G | 46 | cWW | |
| 3 | HL_3RKF_007 | 3RKF | 0.1256 | 1 | C | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | A | 37 | G | 38 | C | 39 | cWW | |
| 4 | HL_1Y27_001 | 1Y27 | 0.1052 | 1 | X | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
| 5 | HL_5KPY_001 | 5KPY | 0.0000 | 1 | A | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
| 6 | HL_6P2H_001 | 6P2H | 0.1295 | 1 | A | A | 31 | A | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | cWW | ncSs |
| 7 | HL_4FEN_001 | 4FEN | 0.1591 | 1 | B | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAUGGC | 3 |
| CAUAAUGGG | 2 |
| GGAUAUAGC | 1 |
| AAAUAUGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAUGG | 3 |
| AUAAUGG | 2 |
| GAUAUAG | 1 |
| AAUAUGG | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.38 | Max 0.81
Coloring options: