Motif HL_20743.5 Version HL_20743.5 of this group appears in releases 3.89 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SKI_001 | 3SKI | 0.7722 | 1 | A | RNA (68-MER) | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 46 | G | 47 | cWW | ncsS |
| 2 | HL_3SKL_004 | 3SKL | 0.7603 | 1 | B | RNA (66-MER) | C | 38 | A | 39 | U | 40 | A | 41 | A | 42 | G | 44 | G | 45 | G | 46 | cWW | |
| 3 | HL_3RKF_007 | 3RKF | 0.1256 | 1 | C | Guanine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | A | 37 | G | 38 | C | 39 | cWW | |
| 4 | HL_1Y27_001 | 1Y27 | 0.1052 | 1 | X | Purine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
| 5 | HL_5KPY_001 | 5KPY | 0.0000 | 1 | A | 5-hydroxytryptophan RNA aptamer | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
| 6 | HL_6P2H_001 | 6P2H | 0.1295 | 1 | A | RNA (69-MER) | A | 31 | A | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | cWW | ncSs |
| 7 | HL_4FEN_001 | 4FEN | 0.1591 | 1 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAUGGC | 3 |
| CAUAAUGGG | 2 |
| GGAUAUAGC | 1 |
| AAAUAUGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAUGG | 3 |
| AUAAUGG | 2 |
| GAUAUAG | 1 |
| AAUAUGG | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.38 | Max 0.81
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