#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 51-52-32-4
1 HL_6OL3_0016OL30.48712C VA RNAG64A66C68C69C70cWWntSW
2 HL_8VTW_0648VTW0.499411A LSU rRNAC2701U2702C2704A2705G2706cWWcSH
3 HL_3IGI_0093IGI0.53201AGroup IIC intronC368G369A371C372G373cWWtSW
4 HL_3IVK_0033IVK0.13562Mclass I ligase productG59A61C63A64C65cWWtSW
5 HL_8DK7_0018DK70.09812CRNA (34-MER)G13A15C17A18C19cWWtSW
6 HL_9AUS_0029AUS0.14122RLoop-closed dumbbell RNA bridged by glycineG5A7C9A10C11cWWtSW
7 HL_4KZD_0014KZD0.11642RRNA (84-MER)G37A39C41A42C43cWWtSW
8 HL_8VM8_0038VM80.12482RRNA (93-MER)G63A65C67A68C69cWWtSW
9 HL_6DB9_0016DB90.11602RRNA (60-MER)G23A25C27A28C29cWWtSW
10 HL_8D29_0028D290.09102FRNA (34-MER)G13A15C17A18C19cWWtSW
11 HL_8D29_0038D290.08632JRNA (34-MER)G13A15C17A18C19cWWtSW
12 HL_8VM9_0068VM90.10082RRNA (85-MER)G57A59C61A62C63cWWtSW
13 HL_8T29_0018T290.11552RRNA (90-MER)G35A37C39A40C41cWWtSW
14 HL_8VMB_0018VMB0.11022RRNA (83-MER)G18A20C22A23C24cWWntSW
15 HL_8DP3_0018DP30.08192RRNA (90-MER)G20A22C24A25C26cWWtSW
16 HL_8VMA_0038VMA0.10912CRNA (88-MER)G60A62C64A65C66cWWtSW
17 HL_7MLX_0027MLX0.05632RRNA (65-MER)G40A42C44A45C46cWWtSW
18 HL_8D29_0018D290.00002CRNA (34-MER)G13A15C17A18C19cWWtSW
19 HL_6X5M_0026X5M0.06422rggPAN RNA (39-MER)G14A16C18A19C20cWWtSW
20 HL_8UIW_0018UIW0.07652NyjdF RNA (R. gauvreauii)G29A31C33A34C35cWWtSW
21 HL_7SZU_0017SZU0.08172RRNA aptamerG35A37C39A40C41cWWtSW
22 HL_7A0S_0617A0S0.49812X LSU rRNAC2530U2531U2534C2535G2536cWW
23 HL_4WF9_0584WF90.48542X LSU rRNAC2578U2579U2582C2583G2584cWW
24 HL_5TBW_0635TBW0.535421 LSU rRNAU2920U2921U2924C2925A2926cWW
25 HL_8C3A_0648C3A0.549221 LSU rRNAU2892U2893U2896C2897A2898cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC18
CUGUUCG2
UUGUUCA2
GAACCCC1
CUCCAG1
CGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA18
UGUUC4
AACCC1
UCCA1
GAAC1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (25)
  • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.03 | Avg 0.31 | Max 0.95
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