HL_22584.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-3	2-4
1	HL_6OL3_001	6OL3	0.4871	2	Other HL	C	VA RNA	G	64	A	66	C	68	C	69	C	70	cWW	ntSW
2	HL_8VTW_064	8VTW	0.4994	1	Other HL	1A	LSU rRNA	C	2701	U	2702	C	2704	A	2705	G	2706	cWW	cSH
3	HL_3IGI_009	3IGI	0.5320	1	Other HL	A	Group IIC intron	C	368	G	369	A	371	C	372	G	373	cWW		tSW
4	HL_3IVK_003	3IVK	0.1356	2	Fab BL3-6 binding hairpin with tSW	M	class I ligase product	G	59	A	61	C	63	A	64	C	65	cWW		tSW
5	HL_8DK7_001	8DK7	0.0981	2	Fab BL3-6 binding hairpin with tSW	C	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
6	HL_9AUS_002	9AUS	0.1412	2	Fab BL3-6 binding hairpin with tSW	R	Loop-closed dumbbell RNA bridged by glycine	G	5	A	7	C	9	A	10	C	11	cWW		tSW
7	HL_4KZD_001	4KZD	0.1164	2	Fab BL3-6 binding hairpin with tSW	R	RNA (84-MER)	G	37	A	39	C	41	A	42	C	43	cWW		tSW
8	HL_8VM8_003	8VM8	0.1248	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	63	A	65	C	67	A	68	C	69	cWW		tSW
9	HL_6DB9_001	6DB9	0.1160	2	Fab BL3-6 binding hairpin with tSW	R	RNA (60-MER)	G	23	A	25	C	27	A	28	C	29	cWW		tSW
10	HL_8D29_002	8D29	0.0910	2	Fab BL3-6 binding hairpin with tSW	F	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
11	HL_8D29_003	8D29	0.0863	2	Fab BL3-6 binding hairpin with tSW	J	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
12	HL_8VM9_006	8VM9	0.1008	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	57	A	59	C	61	A	62	C	63	cWW		tSW
13	HL_8T29_001	8T29	0.1155	2	Fab BL3-6 binding hairpin with tSW	R	RNA (90-MER)	G	35	A	37	C	39	A	40	C	41	cWW		tSW
14	HL_8VMB_001	8VMB	0.1102	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	18	A	20	C	22	A	23	C	24	cWW		ntSW
15	HL_8DP3_001	8DP3	0.0819	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	20	A	22	C	24	A	25	C	26	cWW		tSW
16	HL_8VMA_003	8VMA	0.1091	2	Fab BL3-6 binding hairpin with tSW	C	Enterovirus 5' cloverleaf cis-acting replication element	G	60	A	62	C	64	A	65	C	66	cWW		tSW
17	HL_7MLX_002	7MLX	0.0563	2	Fab BL3-6 binding hairpin with tSW	R	RNA (65-MER)	G	40	A	42	C	44	A	45	C	46	cWW		tSW
18	HL_8D29_001	8D29	0.0000	2	Fab BL3-6 binding hairpin with tSW	C	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
19	HL_6X5M_002	6X5M	0.0642	2	Fab BL3-6 binding hairpin with tSW	r	ggPAN RNA (39-MER)	G	14	A	16	C	18	A	19	C	20	cWW		tSW
20	HL_8UIW_001	8UIW	0.0765	2	Fab BL3-6 binding hairpin with tSW	N	azaaromatic riboswitch aptamer (yjdF RNA)	G	29	A	31	C	33	A	34	C	35	cWW		tSW
21	HL_7SZU_001	7SZU	0.0817	2	Fab BL3-6 binding hairpin with tSW	R	RNA aptamer	G	35	A	37	C	39	A	40	C	41	cWW		tSW
22	HL_7A0S_061	7A0S	0.4981	2		X	LSU rRNA	C	2530	U	2531	U	2534	C	2535	G	2536	cWW
23	HL_4WF9_058	4WF9	0.4854	2		X	LSU rRNA	C	2578	U	2579	U	2582	C	2583	G	2584	cWW
24	HL_5TBW_063	5TBW	0.5354	2		1	LSU rRNA	U	2920	U	2921	U	2924	C	2925	A	2926	cWW
25	HL_8C3A_064	8C3A	0.5492	2		1	LSU rRNA	U	2892	U	2893	U	2896	C	2897	A	2898	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAC	18
CUGUUCG	2
UUGUUCA	2
GAACCCC	1
CUCCAG	1
CGAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACA	18
UGUUC	4
AACCC	1
UCCA	1
GAAC	1

Release history

Release	3.88
Date	2024-09-11
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_22584.2 Version HL_22584.2 of this group appears in releases 3.88 to 3.88 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_22584.2 Version HL_22584.2 of this group appears in releases 3.88 to 3.88

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Csv

Json