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Motif HL_22584.3 Version HL_22584.3 of this group appears in releases 3.89 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-32-4
1 HL_3IVK_0033IVK0.08202Fab BL3-6 binding hairpin with tSWMclass I ligase productG59A61C63A64C65cWWtSW
2 HL_9AUS_0029AUS0.07112Fab BL3-6 binding hairpin with tSWRLoop-closed dumbbell RNA bridged by glycineG5A7C9A10C11cWWtSW
3 HL_8VM8_0038VM80.05262Fab BL3-6 binding hairpin with tSWRRNA (93-MER)G63A65C67A68C69cWWtSW
4 HL_4KZD_0014KZD0.04892Fab BL3-6 binding hairpin with tSWRRNA (84-MER)G37A39C41A42C43cWWtSW
5 HL_6DB9_0016DB90.04212Fab BL3-6 binding hairpin with tSWRRNA (60-MER)G23A25C27A28C29cWWtSW
6 HL_8D29_0028D290.00002Fab BL3-6 binding hairpin with tSWFRNA (34-MER)G13A15C17A18C19cWWtSW
7 HL_8D29_0038D290.03782Fab BL3-6 binding hairpin with tSWJRNA (34-MER)G13A15C17A18C19cWWtSW
8 HL_9DN4_0019DN40.05782Fab BL3-6 binding hairpin with tSWERNA (20-mer)G8A10C12A13C14cWWtSW
9 HL_8VM9_0068VM90.05612Fab BL3-6 binding hairpin with tSWRRNA (85-MER)G57A59C61A62C63cWWtSW
10 HL_8DK7_0018DK70.06342Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
11 HL_8UIW_0018UIW0.12782Fab BL3-6 binding hairpin with tSWNyjdF RNA (R. gauvreauii)G29A31C33A34C35cWWtSW
12 HL_7SZU_0017SZU0.14192Fab BL3-6 binding hairpin with tSWRRNA aptamerG35A37C39A40C41cWWtSW
13 HL_6X5M_0026X5M0.12012Fab BL3-6 binding hairpin with tSWrggPAN RNA (39-MER)G14A16C18A19C20cWWtSW
14 HL_8D29_0018D290.09102Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
15 HL_7MLX_0027MLX0.13412Fab BL3-6 binding hairpin with tSWRRNA (65-MER)G40A42C44A45C46cWWtSW
16 HL_8VMA_0038VMA0.16162Fab BL3-6 binding hairpin with tSWCRNA (88-MER)G60A62C64A65C66cWWtSW
17 HL_8DP3_0018DP30.11712Fab BL3-6 binding hairpin with tSWRRNA (90-MER)G20A22C24A25C26cWWtSW
18 HL_8T29_0018T290.12902Fab BL3-6 binding hairpin with tSWRRNA (90-MER)G35A37C39A40C41cWWtSW
19 HL_8VMB_0018VMB0.13622Fab BL3-6 binding hairpin with tSWRRNA (83-MER)G18A20C22A23C24cWWntSW
20 HL_6OL3_0016OL30.58602Other HLC VA RNAG64A66C68C69C70cWWntSW
21 HL_8VTW_0648VTW0.72411Other HL1A LSU rRNAC2701U2702C2704A2705G2706cWWcSH
22 HL_3IGI_0093IGI0.60401Other HLAGroup IIC intronC368G369A371C372G373cWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC19
GAACCCC1
CUCCAG1
CGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA19
AACCC1
UCCA1
GAAC1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (19)
  • Other HL (3)
    • Basepair signature
    cWW-tWS-cWW-F
    Heat map statistics
    Min 0.03 | Avg 0.24 | Max 0.75
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