Motif HL_46142.2 Version HL_46142.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SKL_005 | 3SKL | 0.5711 | 0 | B | RNA (66-MER) | G | 52 | A | 53 | C | 54 | C | 55 | C | 56 | C | 57 | G | 58 | C | 59 | cWW | |
| 2 | HL_3SKI_002 | 3SKI | 0.5566 | 0 | A | RNA (68-MER) | G | 53 | A | 54 | C | 55 | C | 56 | C | 57 | C | 58 | G | 59 | C | 60 | cWW | |
| 3 | HL_4FRN_006 | 4FRN | 0.3718 | 0 | B | Cobalamin riboswitch aptamer domain | U | 44 | U | 45 | A | 46 | C | 47 | U | 48 | U | 49 | G | 50 | A | 51 | cWW | |
| 4 | HL_4GMA_003 | 4GMA | 0.3880 | 0 | Z | Adenosylcobalamin riboswitch | G | 74 | C | 75 | C | 76 | C | 77 | C | 78 | C | 79 | G | 80 | C | 81 | cWW | |
| 5 | HL_5KTJ_001 | 5KTJ | 0.4369 | 0 | A | Pistol (50-MER) | G | 5 | U | 6 | U | 7 | U | 8 | G | 9 | A | 10 | G | 11 | C | 12 | cWW | |
| 6 | HL_5K7D_001 | 5K7D | 0.4189 | 0 | A | RNA 47-MER | G | 5 | U | 6 | U | 7 | A | 8 | G | 9 | G | 10 | G | 11 | C | 12 | cWW | |
| 7 | HL_2JLT_002 | 2JLT | 0.4088 | 0 | B | TAR | C | 5 | C | 6 | U | 7 | G | 8 | G | 9 | G | 10 | A | 11 | G | 12 | cWW | |
| 8 | HL_4V9F_058 | 4V9F | 0.2500 | 0 | 0 | LSU rRNA | U | 2358 | G | 2359 | C | 2360 | A | 2361 | A | 2362 | G | 2363 | A | 2364 | G | 2365 | cWW | |
| 9 | HL_4V8P_140 | 4V8P | 0.1871 | 0 | D1 | LSU rRNA | C | 2682 | A | 2683 | A | 2684 | A | 2685 | A | 2686 | G | 2687 | G | 2688 | G | 2689 | cWW | |
| 10 | HL_5TBW_057 | 5TBW | 0.1460 | 0 | 1 | LSU rRNA | C | 2693 | A | 2694 | A | 2695 | A | 2696 | A | 2697 | G | 2698 | G | 2699 | G | 2700 | cWW | |
| 11 | HL_4Y4O_159 | 4Y4O | 0.0000 | 0 | 2A | LSU rRNA | C | 2324 | G | 2325 | C | 2326 | A | 2327 | A | 2328 | G | 2329 | G | 2330 | G | 2331 | cWW | |
| 12 | HL_4IOA_055 | 4IOA | 0.1042 | 0 | X | LSU rRNA | C | 2303 | G | 2304 | C | 2305 | A | 2306 | A | 2307 | A | 2308 | G | 2309 | G | 2310 | cWW | |
| 13 | HL_4WF9_052 | 4WF9 | 0.1621 | 0 | X | LSU rRNA | U | 2351 | G | 2352 | U | 2353 | A | 2354 | A | 2355 | A | 2356 | G | 2357 | G | 2358 | ncWW | |
| 14 | HL_5J7L_189 | 5J7L | 0.2142 | 0 | DA | LSU rRNA | U | 2324 | G | 2325 | C | 2326 | A | 2327 | A | 2328 | U | 2329 | G | 2330 | G | 2331 | cWW | |
| 15 | HL_4QK8_003 | 4QK8 | 0.5622 | 1 | A | C-di-AMP riboswitch | U | 71 | C | 73 | C | 74 | U | 75 | U | 76 | C | 77 | U | 78 | G | 79 | cWW | |
| 16 | HL_5TBW_060 | 5TBW | 0.4945 | 1 | 1 | LSU rRNA | C | 2776 | G | 2778 | A | 2779 | A | 2780 | U | 2781 | U | 2782 | U | 2783 | G | 2784 | cWW | |
| 17 | HL_4V8P_143 | 4V8P | 0.5666 | 1 | D1 | LSU rRNA | A | 2764 | A | 2766 | A | 2767 | G | 2768 | U | 2769 | U | 2770 | U | 2771 | U | 2772 | cWW | |
| 18 | HL_3G9C_007 | 3G9C | 0.5141 | 1 | Q | GLMS RIBOZYME | G | 71 | U | 73 | C | 74 | A | 75 | U | 76 | C | 77 | A | 78 | C | 79 | cWW | |
| 19 | HL_4V9F_061 | 4V9F | 0.4668 | 1 | 0 | LSU rRNA | G | 2442 | U | 2444 | U | 2445 | G | 2446 | A | 2447 | U | 2448 | G | 2449 | C | 2450 | cWW | |
| 20 | HL_4V9F_014 | 4V9F | 0.5357 | 1 | 0 | LSU rRNA | G | 416 | C | 418 | A | 419 | U | 420 | C | 421 | G | 422 | A | 423 | C | 424 | cWW | |
| 21 | HL_5TBW_009 | 5TBW | 0.6312 | 2 | 1 | LSU rRNA | G | 303 | A | 306 | A | 307 | A | 308 | U | 309 | U | 310 | C | 311 | C | 312 | cWW | |
| 22 | HL_4ENC_001 | 4ENC | 0.7150 | 2 | A | Fluoride riboswitch | G | 5 | G | 8 | A | 9 | G | 10 | G | 11 | C | 12 | C | 13 | C | 14 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACCCCGC | 2 |
| CAAAAGGG | 2 |
| UUACUUGA | 1 |
| GCCCCCGC | 1 |
| GUUUGAGC | 1 |
| GUUAGGGC | 1 |
| CCUGGGAG | 1 |
| UGCAAGAG | 1 |
| CGCAAGGG | 1 |
| CGCAAAGG | 1 |
| UGUAAAGG | 1 |
| UGCAAUGG | 1 |
| UACCUUCUG | 1 |
| CGGAAUUUG | 1 |
| ACAAGUUUU | 1 |
| GUUCAUCAC | 1 |
| GCUUGAUGC | 1 |
| GGCAUCGAC | 1 |
| GGUAAAUUCC | 1 |
| GAUGAGGCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCCCG | 2 |
| AAAAGG | 2 |
| UACUUG | 1 |
| CCCCCG | 1 |
| UUUGAG | 1 |
| UUAGGG | 1 |
| CUGGGA | 1 |
| GCAAGA | 1 |
| GCAAGG | 1 |
| GCAAAG | 1 |
| GUAAAG | 1 |
| GCAAUG | 1 |
| ACCUUCU | 1 |
| GGAAUUU | 1 |
| CAAGUUU | 1 |
| UUCAUCA | 1 |
| CUUGAUG | 1 |
| GCAUCGA | 1 |
| GUAAAUUC | 1 |
| AUGAGGCC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.46 | Max 0.80
Coloring options: