Motif HL_54035.3 Version HL_54035.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_024 | 5J7L | 0.4654 | 0 | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW | |
| 2 | HL_4LFB_025 | 4LFB | 0.4746 | 0 | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW | |
| 3 | HL_4V88_215 | 4V88 | 0.3048 | 0 | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1314 | U | 1315 | G | 1316 | cWW | cwW | |
| 4 | HL_5TBW_008 | 5TBW | 0.4337 | 2 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | A | 285 | U | 286 | G | 287 | cWW | cwW | |
| 5 | HL_5TBW_024 | 5TBW | 0.0000 | 0 | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1081 | U | 1082 | G | 1083 | cWW | cwW | |
| 6 | HL_3R4F_001 | 3R4F | 0.3786 | 0 | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW | |
| 7 | HL_3R4F_003 | 3R4F | 0.3786 | 0 | A | pRNA | A | 24||||15_545 | U | 25||||15_545 | U | 26||||15_545 | G | 27||||15_545 | A | 28||||15_545 | G | 29||||15_545 | U | 30||||15_545 | U | 31||||15_545 | cWW | cwW | |
| 8 | HL_3IVK_005 | 3IVK | 0.8050 | 0 | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 2 |
| CUUAAUUG | 2 |
| AUUGAGUU | 2 |
| UUUGGGAAUG | 1 |
| GUUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAGU | 2 |
| UUAAUU | 2 |
| UUGAGU | 2 |
| UUGGGAAU | 1 |
| UUAAAA | 1 |
- Annotations
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.48 | Max 0.91
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