#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 81-82-7
1 HL_5TBW_0085TBW0.433721 LSU rRNAU278U279U280G281G282A285U286G287cWWcwW
2 HL_5J7L_0245J7L0.46540T-loop relatedAA SSU rRNAG1089U1090U1091A1092A1093G1094U1095C1096cWWcwW
3 HL_4LFB_0254LFB0.47460T-loop relatedA SSU rRNAG1089U1090U1091A1092A1093G1094U1095C1096cWWcwW
4 HL_6CZR_0966CZR0.50910T-loop related1a SSU rRNAG1072U1073U1074A1075A1076G1077U1078C1079cWWcwW
5 HL_4V88_2154V880.30480T-loop related (H)A6 SSU rRNAC1309U1310U1311A1312A1313U1314U1315G1316cWWcwW
6 HL_5TBW_0245TBW0.000001 LSU rRNAC1076U1077U1078A1079A1080U1081U1082G1083cWWcwW
7 HL_3R4F_0013R4F0.37860T-loop relatedApRNAA24U25U26G27A28G29U30U31cWWcwW
8 HL_3R4F_0033R4F0.37860ApRNAA24||||15_545U25||||15_545U26||||15_545G27||||15_545A28||||15_545G29||||15_545U30||||15_545U31||||15_545cWWcwW
9 HL_3IVK_0053IVK0.80500T-loop relatedMclass I ligase productG92U93U94A95A96A97A98C99cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
GUUAAGUC3
CUUAAUUG2
AUUGAGUU2
UUUGGGAAUG1
GUUAAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
UUAAGU3
UUAAUU2
UUGAGU2
UUGGGAAU1
UUAAAA1

Release history

Release3.543.553.563.573.583.593.603.61
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop related (5)
  • (3)
  • T-loop related (H) (1)
  • Basepair signature
    cWW-cWW-R-R-R
    Heat map statistics
    Min 0.10 | Avg 0.48 | Max 0.91
    Help

    Coloring options:

    HL_5TBW_008:HL_5TBW_008 = 0HL_5TBW_008:HL_5J7L_024 = 0.5743HL_5TBW_008:HL_4LFB_025 = 0.5676HL_5TBW_008:HL_6CZR_096 = 0.6025HL_5TBW_008:HL_4V88_215 = 0.5051HL_5TBW_008:HL_5TBW_024 = 0.4337HL_5TBW_008:HL_3R4F_001 = 0.5928HL_5TBW_008:HL_3R4F_003 = 0.5928HL_5TBW_008:HL_3IVK_005 = 0.8362HL_5J7L_024:HL_5TBW_008 = 0.5743HL_5J7L_024:HL_5J7L_024 = 0HL_5J7L_024:HL_4LFB_025 = 0.0954HL_5J7L_024:HL_6CZR_096 = 0.2191HL_5J7L_024:HL_4V88_215 = 0.3041HL_5J7L_024:HL_5TBW_024 = 0.4654HL_5J7L_024:HL_3R4F_001 = 0.6105HL_5J7L_024:HL_3R4F_003 = 0.6105HL_5J7L_024:HL_3IVK_005 = 0.902HL_4LFB_025:HL_5TBW_008 = 0.5676HL_4LFB_025:HL_5J7L_024 = 0.0954HL_4LFB_025:HL_4LFB_025 = 0HL_4LFB_025:HL_6CZR_096 = 0.1966HL_4LFB_025:HL_4V88_215 = 0.2999HL_4LFB_025:HL_5TBW_024 = 0.4746HL_4LFB_025:HL_3R4F_001 = 0.6246HL_4LFB_025:HL_3R4F_003 = 0.6246HL_4LFB_025:HL_3IVK_005 = 0.8826HL_6CZR_096:HL_5TBW_008 = 0.6025HL_6CZR_096:HL_5J7L_024 = 0.2191HL_6CZR_096:HL_4LFB_025 = 0.1966HL_6CZR_096:HL_6CZR_096 = 0HL_6CZR_096:HL_4V88_215 = 0.3188HL_6CZR_096:HL_5TBW_024 = 0.5091HL_6CZR_096:HL_3R4F_001 = 0.6773HL_6CZR_096:HL_3R4F_003 = 0.6773HL_6CZR_096:HL_3IVK_005 = 0.8978HL_4V88_215:HL_5TBW_008 = 0.5051HL_4V88_215:HL_5J7L_024 = 0.3041HL_4V88_215:HL_4LFB_025 = 0.2999HL_4V88_215:HL_6CZR_096 = 0.3188HL_4V88_215:HL_4V88_215 = 0HL_4V88_215:HL_5TBW_024 = 0.3048HL_4V88_215:HL_3R4F_001 = 0.5757HL_4V88_215:HL_3R4F_003 = 0.5757HL_4V88_215:HL_3IVK_005 = 0.9147HL_5TBW_024:HL_5TBW_008 = 0.4337HL_5TBW_024:HL_5J7L_024 = 0.4654HL_5TBW_024:HL_4LFB_025 = 0.4746HL_5TBW_024:HL_6CZR_096 = 0.5091HL_5TBW_024:HL_4V88_215 = 0.3048HL_5TBW_024:HL_5TBW_024 = 0HL_5TBW_024:HL_3R4F_001 = 0.3786HL_5TBW_024:HL_3R4F_003 = 0.3786HL_5TBW_024:HL_3IVK_005 = 0.805HL_3R4F_001:HL_5TBW_008 = 0.5928HL_3R4F_001:HL_5J7L_024 = 0.6105HL_3R4F_001:HL_4LFB_025 = 0.6246HL_3R4F_001:HL_6CZR_096 = 0.6773HL_3R4F_001:HL_4V88_215 = 0.5757HL_3R4F_001:HL_5TBW_024 = 0.3786HL_3R4F_001:HL_3R4F_001 = 0HL_3R4F_001:HL_3R4F_003 = 0HL_3R4F_001:HL_3IVK_005 = 0.7139HL_3R4F_003:HL_5TBW_008 = 0.5928HL_3R4F_003:HL_5J7L_024 = 0.6105HL_3R4F_003:HL_4LFB_025 = 0.6246HL_3R4F_003:HL_6CZR_096 = 0.6773HL_3R4F_003:HL_4V88_215 = 0.5757HL_3R4F_003:HL_5TBW_024 = 0.3786HL_3R4F_003:HL_3R4F_001 = 0HL_3R4F_003:HL_3R4F_003 = 0HL_3R4F_003:HL_3IVK_005 = 0.7139HL_3IVK_005:HL_5TBW_008 = 0.8362HL_3IVK_005:HL_5J7L_024 = 0.902HL_3IVK_005:HL_4LFB_025 = 0.8826HL_3IVK_005:HL_6CZR_096 = 0.8978HL_3IVK_005:HL_4V88_215 = 0.9147HL_3IVK_005:HL_5TBW_024 = 0.805HL_3IVK_005:HL_3R4F_001 = 0.7139HL_3IVK_005:HL_3R4F_003 = 0.7139HL_3IVK_005:HL_3IVK_005 = 0HL_5TBW_008HL_5J7L_024HL_4LFB_025HL_6CZR_096HL_4V88_215HL_5TBW_024HL_3R4F_001HL_3R4F_003HL_3IVK_005Discrepancy0.000.200.400.600.80
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