Motif HL_54035.7 Version HL_54035.7 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_008 | 5TBW | 0.5676 | 2 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | A | 285 | U | 286 | G | 287 | cWW | cwW | |
| 2 | HL_5J7L_024 | 5J7L | 0.0954 | 0 | T-loop related | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW |
| 3 | HL_4LFB_025 | 4LFB | 0.0000 | 0 | T-loop related | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW |
| 4 | HL_6CZR_096 | 6CZR | 0.1966 | 0 | T-loop related | 1a | SSU rRNA | G | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | G | 1077 | U | 1078 | C | 1079 | cWW | cwW |
| 5 | HL_4V88_215 | 4V88 | 0.2999 | 0 | T-loop related (H) | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1314 | U | 1315 | G | 1316 | cWW | cwW |
| 6 | HL_5TBW_024 | 5TBW | 0.4746 | 0 | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1081 | U | 1082 | G | 1083 | cWW | cwW | |
| 7 | HL_3R4F_001 | 3R4F | 0.6246 | 0 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW |
| 8 | HL_3IVK_005 | 3IVK | 0.8826 | 0 | T-loop related | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 3 |
| CUUAAUUG | 2 |
| UUUGGGAAUG | 1 |
| AUUGAGUU | 1 |
| GUUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAGU | 3 |
| UUAAUU | 2 |
| UUGGGAAU | 1 |
| UUGAGU | 1 |
| UUAAAA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop related (5)
- (2)
- T-loop related (H) (1)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.48 | Max 0.91
Coloring options: