Motif HL_60381.1 Version HL_60381.1 of this group appears in releases 3.12 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_050 | 5TBW | 0.7467 | 1 | 1 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |||
| 2 | HL_4WF9_046 | 4WF9 | 0.7797 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB | ||
| 3 | HL_4IOA_047 | 4IOA | 0.7640 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | ||
| 4 | HL_4Y4O_151 | 4Y4O | 0.7483 | 1 | 2A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | |||
| 5 | HL_5J7L_182 | 5J7L | 0.7759 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | ||
| 6 | HL_4V9F_051 | 4V9F | 0.6779 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW | |||
| 7 | HL_4R4V_003 | 4R4V | 0.4327 | 1 | T-loop related | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | ||
| 8 | HL_4R4V_007 | 4R4V | 0.4327 | 1 | A | VS ribozyme RNA | G | 689||||7_556 | U | 690||||7_556 | U | 691||||7_556 | G | 692||||7_556 | A | 693||||7_556 | C | 694||||7_556 | A | 696||||7_556 | C | 697||||7_556 | cWW | |||
| 9 | HL_4Y4O_160 | 4Y4O | 0.4972 | 0 | 2A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | ||
| 10 | HL_4WF9_053 | 4WF9 | 0.4769 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | |
| 11 | HL_4IOA_056 | 4IOA | 0.3849 | 0 | GNRA with extra cWW (H) | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | |
| 12 | HL_1HC8_002 | 1HC8 | 0.3710 | 0 | GNRA wlth tandem sheared (H) | C | LSU rRNA | C | 142 | G | 143 | U | 144 | A | 145 | A | 146 | U | 147 | A | 148 | G | 149 | cWW | tSH | |
| 13 | HL_5D8H_002 | 5D8H | 0.3530 | 0 | GNRA wlth tandem sheared | A | LSU rRNA | C | 1202 | G | 1203 | U | 1204 | A | 1205 | A | 1206 | C | 1207 | A | 1208 | G | 1209 | cWW | tSH | |
| 14 | HL_1MMS_002 | 1MMS | 0.3509 | 0 | GNRA wlth tandem sheared | C | 23S RIBOSOMAL RNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSHa |
| 15 | HL_5J7L_154 | 5J7L | 0.2583 | 0 | GNRA wlth tandem sheared | DA | LSU rRNA | G | 712 | G | 713 | U | 714 | A | 715 | A | 716 | C | 717 | A | 718 | C | 719 | cWW | tSH | |
| 16 | HL_4Y4O_124 | 4Y4O | 0.3095 | 0 | 2A | LSU rRNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | ||
| 17 | HL_3HHN_010 | 3HHN | 0.2705 | 0 | GNRA wlth tandem sheared | E | Class I ligase ribozyme, self-ligation product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH | |
| 18 | HL_5AOX_001 | 5AOX | 0.0000 | 0 | GNRA wlth tandem sheared | C | ALU JO CONSENSUS RNA | G | 11 | G | 12 | U | 13 | G | 14 | G | 15 | C | 16 | U | 17 | C | 18 | cWW | ntSH | |
| 19 | HL_1E8O_001 | 1E8O | 0.2336 | 0 | GNRA wlth tandem sheared | E | 7SL RNA | G | 110 | G | 111 | U | 112 | G | 113 | G | 114 | C | 115 | G | 116 | C | 117 | cWW | ntSH | ntSHa |
| 20 | HL_4WF9_004 | 4WF9 | 0.3739 | 0 | GNRA wlth tandem sheared | X | LSU rRNA | A | 136 | G | 137 | U | 138 | U | 139 | A | 140 | U | 141 | G | 142 | U | 143 | cWW | ||
| 21 | HL_4V9F_049 | 4V9F | 0.7488 | 0 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| GUUGACUAC | 2 |
| CGUAACAG | 2 |
| UCUAAUUAG | 1 |
| CAUCAGUAG | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| CUGACACG | 1 |
| CGUAAUAG | 1 |
| GGUAACAC | 1 |
| GGUGAGAC | 1 |
| GUUAAAAC | 1 |
| GGUGGCUC | 1 |
| GGUGGCGC | 1 |
| AGUUAUGU | 1 |
| CGUACAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| GUAACA | 3 |
| UUGACUA | 2 |
| CUAAUUA | 1 |
| AUCAGUA | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| UGACAC | 1 |
| GUAAUA | 1 |
| GUGAGA | 1 |
| UUAAAA | 1 |
| GUGGCU | 1 |
| GUGGCG | 1 |
| GUUAUG | 1 |
| GUACAA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- GNRA wlth tandem sheared (7)
- GNRA wlth tandem sheared (H) (1)
- GNRA with extra cWW (H) (1)
- T-loop related (1)
- GNRA related (1)
- GNRA with extra cWW (1)
- Basepair signature
- cWW-tSH-R-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.58 | Max 0.97
Coloring options: