#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 81-82-62-73-53-6
1 HL_4V88_2134V880.43282Anticodon loop relatedA6 SSU rRNAA1238U1239U1240G1241A1242A1244C1246U1247cWWntSW
2 HL_8C3A_2188C3A0.34072Anticodon loop relatedCM SSU rRNAA1223U1224U1225G1226A1227A1229C1231U1232cWWntsS
3 HL_5UD5_0025UD50.00001tRNA anticodon loopC tRNAA31C32U33C34A36A37A38U39cWWncWWntSH
4 HL_4V9F_0324V9F0.20021Anticodon loop related0 LSU rRNAA1274C1275U1276C1277A1278A1280C1281U1282cWWcWBntSH
5 HL_1H3E_0021H3E0.23461tRNA anticodon loopB tRNAU31C32U33G34A36A37A38A39cWWncWB
6 HL_2D6F_0052D6F0.26271tRNA anticodon loopFtRNAG931C932U933U934G936G937A938C939cWWcWW
7 HL_5T83_0025T830.29991Anticodon loop relatedAGuanidine-I riboswitchU56U57U58A60C61A62A63A64cWWntSHa
8 HL_1U0B_0021U0B0.26321tRNA anticodon loopA tRNAA31U32U33C35A36A37A38U39cWW
9 HL_3WFS_0023WFS0.41541tRNA anticodon loopA tRNAA31C32U33A35A36A37A38U39ncWWncWW
10 HL_3W3S_0023W3S0.41831tRNA anticodon loopBSelenocysteine transfer RNAA31C32U33C35A36A37A38U39cWWncWW
11 HL_7PMQ_0037PMQ0.35540Anticodon loop relatedFRNA (42-MER)G8U9U10U11C12G13A14C15cWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUUGAGAGCU2
ACUCUAAAU1
ACUCAUACU1
UCUGAAAA1
GCUUUGGAC1
UUUCACAAA1
AUUGCAAAU1
ACUGAAAAU1
ACUUCAAAU1
GUUUCGAC1
Non-Watson-Crick part of the motif
SequenceCounts
UUGAGAGC2
CUCUAAA1
CUCAUAC1
CUG(PSU)AAA1
CUUUGGA1
UUCACAA1
UUGCAAA1
CUGAAAA1
CUUCAAA1
UUUCGA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA anticodon loop (6)
  • Anticodon loop related (5)
  • Basepair signature
    cWW-cWS-R
    Heat map statistics
    Min 0.19 | Avg 0.40 | Max 0.82
    Help

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