Motif HL_66836.1 Version HL_66836.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-5 | 3-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4V88_213 | 4V88 | 0.4328 | 2 | Anticodon loop related | A6 | SSU rRNA | A | 1238 | U | 1239 | U | 1240 | G | 1241 | A | 1242 | A | 1244 | C | 1246 | U | 1247 | cWW | ntSW | |||
2 | HL_8C3A_218 | 8C3A | 0.3407 | 2 | Anticodon loop related | CM | SSU rRNA | A | 1223 | U | 1224 | U | 1225 | G | 1226 | A | 1227 | A | 1229 | C | 1231 | U | 1232 | cWW | ntsS | |||
3 | HL_5UD5_002 | 5UD5 | 0.0000 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH | ||
4 | HL_4V9F_032 | 4V9F | 0.2002 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH | ||
5 | HL_1H3E_002 | 1H3E | 0.2346 | 1 | tRNA anticodon loop | B | tRNA | U | 31 | C | 32 | U | 33 | G | 34 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ncWB | |||
6 | HL_2D6F_005 | 2D6F | 0.2627 | 1 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | U | 934 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | |||
7 | HL_5T83_002 | 5T83 | 0.2999 | 1 | Anticodon loop related | A | Guanidine-I riboswitch | U | 56 | U | 57 | U | 58 | A | 60 | C | 61 | A | 62 | A | 63 | A | 64 | cWW | ntSHa | |||
8 | HL_1U0B_002 | 1U0B | 0.2632 | 1 | tRNA anticodon loop | A | tRNA | A | 31 | U | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||||
9 | HL_3WFS_002 | 3WFS | 0.4154 | 1 | tRNA anticodon loop | A | tRNA | A | 31 | C | 32 | U | 33 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | ncWW | ncWW | |||
10 | HL_3W3S_002 | 3W3S | 0.4183 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |||
11 | HL_7PMQ_003 | 7PMQ | 0.3554 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUUGAGAGCU | 2 |
ACUCUAAAU | 1 |
ACUCAUACU | 1 |
UCUGAAAA | 1 |
GCUUUGGAC | 1 |
UUUCACAAA | 1 |
AUUGCAAAU | 1 |
ACUGAAAAU | 1 |
ACUUCAAAU | 1 |
GUUUCGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUGAGAGC | 2 |
CUCUAAA | 1 |
CUCAUAC | 1 |
CUG(PSU)AAA | 1 |
CUUUGGA | 1 |
UUCACAA | 1 |
UUGCAAA | 1 |
CUGAAAA | 1 |
CUUCAAA | 1 |
UUUCGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (6)
- Anticodon loop related (5)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.19 | Avg 0.40 | Max 0.82
Coloring options: