Motif HL_68493.5 Version HL_68493.5 of this group appears in releases 3.54 to 3.57
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2GDI_002 | 2GDI | 0.4909 | 1 | Other HL | X | TPP riboswitch | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW | |
| 2 | HL_4V9F_039 | 4V9F | 0.5794 | 0 | Other HL | 0 | LSU rRNA | C | 1594 | G | 1595 | U | 1596 | A | 1597 | A | 1598 | U | 1599 | G | 1600 | cWW | |
| 3 | HL_4V88_191 | 4V88 | 0.3491 | 1 | T-loop with 1 bulged base | A6 | SSU rRNA | G | 243 | A | 244 | U | 245 | G | 246 | A | 247 | U | 248 | C | 250 | cWW | |
| 4 | HL_5TBW_005 | 5TBW | 0.1455 | 1 | T-loop with 1 bulged base | 1 | LSU rRNA | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | A | 201 | cWW | tWH |
| 5 | HL_4V9F_010 | 4V9F | 0.1215 | 1 | T-loop with 1 bulged base | 0 | LSU rRNA | U | 312 | U | 313 | G | 314 | G | 315 | A | 316 | A | 317 | A | 319 | cWW | tWH |
| 6 | HL_5DH6_002 | 5DH6 | 0.0000 | 1 | T-loop with 1 bulged base | A | hammerhead ribozyme | C | 27 | U | 28 | G | 29 | G | 30 | G | 31 | A | 32 | G | 34 | cWW | tWH |
| 7 | HL_5J7L_142 | 5J7L | 0.1113 | 1 | T-loop with 1 bulged base | DA | LSU rRNA | C | 305 | U | 306 | G | 307 | G | 308 | A | 309 | A | 310 | G | 312 | cWW | tWH |
| 8 | HL_7A0S_010 | 7A0S | 0.1380 | 1 | X | LSU rRNA | C | 316 | U | 317 | G | 318 | G | 319 | A | 320 | A | 321 | G | 323 | cWW | tWH | |
| 9 | HL_7RQB_010 | 7RQB | 0.1946 | 1 | 1A | LSU rRNA | U | 305 | U | 306 | G | 307 | G | 308 | G | 309 | A | 310 | G | 312 | cWW | tWH | |
| 10 | HL_2A64_002 | 2A64 | 0.3156 | 1 | T-loop with 1 bulged base | A | ribonuclease P RNA | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | G | 76 | cWW | tWH |
| 11 | HL_4WF9_010 | 4WF9 | 0.5664 | 1 | T-loop with 1 bulged base | X | LSU rRNA | C | 348 | U | 349 | G | 350 | G | 351 | A | 352 | A | 353 | G | 355 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGAAAG | 3 |
| GAUAAUGC | 1 |
| CGUAAUG | 1 |
| GAUGAUUC | 1 |
| UUGGAACA | 1 |
| UUGGAAUA | 1 |
| CUGGGAUG | 1 |
| UUGGGAAG | 1 |
| CUGAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAAA | 3 |
| AUAAUG | 1 |
| GUAAU | 1 |
| AUGAUU | 1 |
| UGGAAC | 1 |
| UGGAAU | 1 |
| UGGGAU | 1 |
| UGGGAA | 1 |
| UGAGAU | 1 |
- Annotations
-
- T-loop with 1 bulged base (7)
- Other HL (2)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.38 | Max 0.90
Coloring options: