Motif HL_70420.6 Version HL_70420.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-11 | 2-13 | 3-12 | 4-9 | 5-8 | 6-7 | 11-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_068 | 2QBG | 0.1565 | 1 | B | 23S rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | C | 2755 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | tSH | tHW | tHW | tSW | cWH | |
| 2 | HL_4QCN_064 | 4QCN | 0.1432 | 1 | A | 23S Ribosomal RNA | C | 2758 | U | 2759 | G | 2760 | A | 2761 | A | 2762 | A | 2763 | C | 2765 | A | 2766 | U | 2767 | C | 2768 | U | 2769 | A | 2770 | A | 2771 | G | 2772 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
| 3 | HL_4IOA_065 | 4IOA | 0.1448 | 1 | X | LSU rRNA | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | C | 2732 | A | 2733 | U | 2734 | C | 2735 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | cWW | tWH | ntSH | tHW | tHW | ntSW | cWH | |
| 4 | HL_4CUV_068 | 4CUV | 0.1575 | 1 | 1 | 25S RRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | C | 3120 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | ntHW | ntSW | cWH |
| 5 | HL_3U5H_068 | 3U5H | 0.1059 | 1 | 5 | 25S rRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | C | 3120 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
| 6 | HL_1S72_068 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | C | 2780 | U | 2781 | G | 2782 | A | 2783 | A | 2784 | C | 2785 | C | 2787 | A | 2788 | U | 2789 | C | 2790 | U | 2791 | A | 2792 | A | 2793 | G | 2794 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
| 7 | HL_1VW3_058 | 1VW3 | 0.0938 | 2 | A | 21S ribosomal RNA | U | 3081 | U | 3082 | G | 3083 | A | 3084 | A | 3085 | U | 3086 | C | 3088 | A | 3089 | U | 3090 | A | 3091 | U | 3092 | A | 3094 | A | 3095 | A | 3096 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
| 8 | HL_4A1B_067 | 4A1B | 0.1228 | 1 | 1 | 26S RRNA | C | 3099 | U | 3100 | G | 3101 | A | 3102 | A | 3103 | G | 3104 | C | 3106 | C | 3107 | U | 3108 | C | 3109 | U | 3110 | A | 3111 | A | 3112 | G | 3113 | cWW | tWH | tSH | tHW | tHW | cWH | ||
| 9 | HL_1VX6_067 | 1VX6 | 0.2559 | 2 | A | 28S ribosomal RNA | C | 3494 | U | 3495 | G | 3496 | A | 3497 | A | 3498 | C | 3499 | C | 3501 | C | 3502 | U | 3503 | C | 3504 | U | 3505 | A | 3507 | A | 3508 | G | 3509 | cWW | tWH | ntSH | ntSW | tHW | tHW | tSW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAGCAUCUAAG | 3 |
| CUGAACGCCUCUAAG | 2 |
| CUGAACGCAUCUAAG | 1 |
| UUGAAUACAUAUUAAA | 1 |
| CUGAAGGCCUCUAAG | 1 |
| CUGAACGCCUCUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAAGCAUCUAA | 3 |
| UGAACGCCUCUAA | 2 |
| UGAACGCAUCUAA | 1 |
| UGAAUACAUAUUAA | 1 |
| UGAAGGCCUCUAA | 1 |
| UGAACGCCUCUUAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_70420.6 | Only in the parent motif |
|---|---|---|---|
| HL_70420.5 Compare | HL_1S72_068, HL_1VW3_058, HL_3U5H_068, HL_4CUV_068, HL_4A1B_067, HL_4IOA_065, HL_2QBG_068, HL_1VX6_067 | HL_4QCN_064 | HL_4NVV_064 |
Children motifs
| Child motif | Common motif instances | Only in HL_70420.6 | Only in the child motif |
|---|---|---|---|
| HL_70420.7 Compare | HL_1S72_068, HL_1VW3_058, HL_3U5H_068, HL_4QCN_064, HL_4CUV_068, HL_4A1B_067, HL_4IOA_065, HL_2QBG_068, HL_1VX6_067 | HL_4W21_067 |
- Annotations
-
- (9)
- Basepair signature
- cWW-tSH-cWH-tSH-tWH-R-tHW-tHW-R-R
- Heat map statistics
- Min 0.09 | Avg 0.16 | Max 0.28
Coloring options: