HL_71309.1

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_8SP9_004	8SP9	0.2912	T-loop with 2 stacked bulged bases	C	Enterovirus 5' cloverleaf cis-acting replication element	G	130	U	131	U	132	C	133	A	134	A	135	G	136	U	137	C	138	cWW	ntWH
2	HL_4V8Q_110	4V8Q	0.2532	T-loop with 2 stacked bulged bases	BY	SsrA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
3	HL_3ICQ_005	3ICQ	0.2506	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
4	HL_3WFS_003	3WFS	0.2522	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
5	HL_7UZ0_003	7UZ0	0.2141	T-loop with 2 stacked bulged bases	A	tRNA	G	68	U	69	U	70	C	71	G	72	A	73	G	74	U	75	C	76	cWW	tWH
6	HL_4TUE_035	4TUE	0.2673	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
7	HL_5WT1_003	5WT1	0.2326	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
8	HL_4P5J_003	4P5J	0.2116	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
9	HL_4GCW_002	4GCW	0.1845	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
10	HL_6CU1_001	6CU1	0.2485	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
11	HL_7K98_003	7K98	0.2259	T-loop with 2 stacked bulged bases	C	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	U	60	C	61	C	62	cWW	tWH
12	HL_7EQJ_006	7EQJ	0.2306	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
13	HL_1QU2_003	1QU2	0.2400	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
14	HL_1U0B_003	1U0B	0.2321	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
15	HL_3EPH_003	3EPH	0.1959	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
16	HL_1N78_003	1N78	0.2015	T-loop with 2 stacked bulged bases	C	tRNA(Glu)	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
17	HL_3TUP_003	3TUP	0.1921	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
18	HL_4QEI_003	4QEI	0.2325	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
19	HL_5E6M_003	5E6M	0.2080	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
20	HL_3AM1_004	3AM1	0.2299	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
21	HL_3IGI_001	3IGI	0.1387	T-loop with 2 stacked bulged bases	A	Group IIC intron	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
22	HL_6JQ5_003	6JQ5	0.0859	T-loop with 2 stacked bulged bases	B	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
23	HL_6JQ5_001	6JQ5	0.0746	T-loop with 2 stacked bulged bases	A	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
24	HL_6JQ6_003	6JQ6	0.0000	T-loop with 2 stacked bulged bases	U	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
25	HL_4GXY_002	4GXY	0.2052	T-loop with 2 stacked bulged bases	A	Adenosylcobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAUUC	6
GUUCGAUCC	4
GUGAGAAUC	3
GUUCAAGUC	2
GUUCGACUC	2
GUUCAAAUC	2
GUUCGAGUC	1
GUGCAACUC	1
GUUCGAGCC	1
GUUCGAGAC	1
GUGAGAGUC	1
GUGCAAGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAUU	6
UUCGAUC	4
UGAGAAU	3
UUCAAGU	2
UUCGACU	2
UUCAAAU	2
UUCGAGU	1
UGCAACU	1
UUCGAGC	1
UUCGAGA	1
UGAGAGU	1
UGCAAGU	1

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_71309.1 Version HL_71309.1 of this group appears in releases 3.77 to 3.83 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_71309.1 Version HL_71309.1 of this group appears in releases 3.77 to 3.83

Download

Csv

Json