#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-72-6
1 HL_4V88_2154V880.20841T-loop related (H)A6 SSU rRNAC1309U1310U1311A1312A1313U1315G1316cWWcwW
2 HL_5TBW_0245TBW0.196411 LSU rRNAC1076U1077U1078A1079A1080U1082G1083cWWcwW
3 HL_3R4F_0013R4F0.19711T-loop relatedApRNAA24U25U26G27A28U30U31cWWcwW
4 HL_5TBW_0085TBW0.120931 LSU rRNAU278U279U280G281G282U286G287cWWcwW
5 HL_4V9F_0134V9F0.000030 LSU rRNAG390U391U392G393G394U398C399cWWcwW
6 HL_4LFB_0254LFB0.14391T-loop relatedA SSU rRNAG1089U1090U1091A1092A1093U1095C1096cWWcwW
7 HL_5J7L_0245J7L0.15871T-loop relatedAA SSU rRNAG1089U1090U1091A1092A1093U1095C1096cWWcwW
8 HL_6CZR_0966CZR0.27281T-loop related1a SSU rRNAG1072U1073U1074A1075A1076U1078C1079cWWcwW
9 HL_2CSX_0022CSX0.90242CRNA (75-MER)U31C32U33C34A35A38G39cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUAAGUC3
CUUAAUUG2
AUUGAGUU1
UUUGGGAAUG1
GUUGGAUAUC1
UCUCAUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAAGU3
UUAAUU2
UUGAGU1
UUGGGAAU1
UUGGAUAU1
CUCAUAA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • T-loop related (4)
  • T-loop related (H) (1)
  • Basepair signature
    cWW-cWW-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.32 | Max 0.99
    Help

    Coloring options:

    HL_4V88_215:HL_4V88_215 = 0HL_4V88_215:HL_5TBW_024 = 0.1684HL_4V88_215:HL_3R4F_001 = 0.2523HL_4V88_215:HL_5TBW_008 = 0.2005HL_4V88_215:HL_4V9F_013 = 0.2084HL_4V88_215:HL_4LFB_025 = 0.1669HL_4V88_215:HL_5J7L_024 = 0.188HL_4V88_215:HL_6CZR_096 = 0.2467HL_4V88_215:HL_2CSX_002 = 0.9414HL_5TBW_024:HL_4V88_215 = 0.1684HL_5TBW_024:HL_5TBW_024 = 0HL_5TBW_024:HL_3R4F_001 = 0.1779HL_5TBW_024:HL_5TBW_008 = 0.1593HL_5TBW_024:HL_4V9F_013 = 0.1964HL_5TBW_024:HL_4LFB_025 = 0.1825HL_5TBW_024:HL_5J7L_024 = 0.1643HL_5TBW_024:HL_6CZR_096 = 0.2518HL_5TBW_024:HL_2CSX_002 = 0.9898HL_3R4F_001:HL_4V88_215 = 0.2523HL_3R4F_001:HL_5TBW_024 = 0.1779HL_3R4F_001:HL_3R4F_001 = 0HL_3R4F_001:HL_5TBW_008 = 0.1494HL_3R4F_001:HL_4V9F_013 = 0.1971HL_3R4F_001:HL_4LFB_025 = 0.2111HL_3R4F_001:HL_5J7L_024 = 0.2068HL_3R4F_001:HL_6CZR_096 = 0.2946HL_3R4F_001:HL_2CSX_002 = 0.9747HL_5TBW_008:HL_4V88_215 = 0.2005HL_5TBW_008:HL_5TBW_024 = 0.1593HL_5TBW_008:HL_3R4F_001 = 0.1494HL_5TBW_008:HL_5TBW_008 = 0HL_5TBW_008:HL_4V9F_013 = 0.1209HL_5TBW_008:HL_4LFB_025 = 0.1482HL_5TBW_008:HL_5J7L_024 = 0.1601HL_5TBW_008:HL_6CZR_096 = 0.271HL_5TBW_008:HL_2CSX_002 = 0.9425HL_4V9F_013:HL_4V88_215 = 0.2084HL_4V9F_013:HL_5TBW_024 = 0.1964HL_4V9F_013:HL_3R4F_001 = 0.1971HL_4V9F_013:HL_5TBW_008 = 0.1209HL_4V9F_013:HL_4V9F_013 = 0HL_4V9F_013:HL_4LFB_025 = 0.1439HL_4V9F_013:HL_5J7L_024 = 0.1587HL_4V9F_013:HL_6CZR_096 = 0.2728HL_4V9F_013:HL_2CSX_002 = 0.9024HL_4LFB_025:HL_4V88_215 = 0.1669HL_4LFB_025:HL_5TBW_024 = 0.1825HL_4LFB_025:HL_3R4F_001 = 0.2111HL_4LFB_025:HL_5TBW_008 = 0.1482HL_4LFB_025:HL_4V9F_013 = 0.1439HL_4LFB_025:HL_4LFB_025 = 0HL_4LFB_025:HL_5J7L_024 = 0.0752HL_4LFB_025:HL_6CZR_096 = 0.1998HL_4LFB_025:HL_2CSX_002 = 0.8936HL_5J7L_024:HL_4V88_215 = 0.188HL_5J7L_024:HL_5TBW_024 = 0.1643HL_5J7L_024:HL_3R4F_001 = 0.2068HL_5J7L_024:HL_5TBW_008 = 0.1601HL_5J7L_024:HL_4V9F_013 = 0.1587HL_5J7L_024:HL_4LFB_025 = 0.0752HL_5J7L_024:HL_5J7L_024 = 0HL_5J7L_024:HL_6CZR_096 = 0.2091HL_5J7L_024:HL_2CSX_002 = 0.9055HL_6CZR_096:HL_4V88_215 = 0.2467HL_6CZR_096:HL_5TBW_024 = 0.2518HL_6CZR_096:HL_3R4F_001 = 0.2946HL_6CZR_096:HL_5TBW_008 = 0.271HL_6CZR_096:HL_4V9F_013 = 0.2728HL_6CZR_096:HL_4LFB_025 = 0.1998HL_6CZR_096:HL_5J7L_024 = 0.2091HL_6CZR_096:HL_6CZR_096 = 0HL_6CZR_096:HL_2CSX_002 = 0.8937HL_2CSX_002:HL_4V88_215 = 0.9414HL_2CSX_002:HL_5TBW_024 = 0.9898HL_2CSX_002:HL_3R4F_001 = 0.9747HL_2CSX_002:HL_5TBW_008 = 0.9425HL_2CSX_002:HL_4V9F_013 = 0.9024HL_2CSX_002:HL_4LFB_025 = 0.8936HL_2CSX_002:HL_5J7L_024 = 0.9055HL_2CSX_002:HL_6CZR_096 = 0.8937HL_2CSX_002:HL_2CSX_002 = 0HL_4V88_215HL_5TBW_024HL_3R4F_001HL_5TBW_008HL_4V9F_013HL_4LFB_025HL_5J7L_024HL_6CZR_096HL_2CSX_002Discrepancy0.000.200.400.600.80
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