Motif HL_71554.1 Version HL_71554.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_215 | 4V88 | 0.2084 | 1 | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 2 | HL_5TBW_024 | 5TBW | 0.1964 | 1 | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
| 3 | HL_3R4F_001 | 3R4F | 0.1971 | 1 | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW | |
| 4 | HL_5TBW_008 | 5TBW | 0.1209 | 3 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 5 | HL_4V9F_013 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | G | 390 | U | 391 | U | 392 | G | 393 | G | 394 | U | 398 | C | 399 | cWW | cwW | |
| 6 | HL_4LFB_025 | 4LFB | 0.1439 | 1 | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 7 | HL_5J7L_024 | 5J7L | 0.1587 | 1 | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 8 | HL_6CZR_096 | 6CZR | 0.2728 | 1 | 1a | SSU rRNA | G | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | U | 1078 | C | 1079 | cWW | cwW | |
| 9 | HL_2CSX_002 | 2CSX | 0.9024 | 2 | C | RNA (75-MER) | U | 31 | C | 32 | U | 33 | C | 34 | A | 35 | A | 38 | G | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 3 |
| CUUAAUUG | 2 |
| AUUGAGUU | 1 |
| UUUGGGAAUG | 1 |
| GUUGGAUAUC | 1 |
| UCUCAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAGU | 3 |
| UUAAUU | 2 |
| UUGAGU | 1 |
| UUGGGAAU | 1 |
| UUGGAUAU | 1 |
| CUCAUAA | 1 |
- Annotations
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.32 | Max 0.99
Coloring options: