Motif HL_71554.2 Version HL_71554.2 of this group appears in releases 3.80 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_096 | 6CZR | 0.2710 | 1 | T-loop related | 1a | SSU rRNA | G | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | U | 1078 | C | 1079 | cWW | cwW |
| 2 | HL_8C3A_220 | 8C3A | 0.1892 | 1 | T-loop related | CM | SSU rRNA | C | 1294 | U | 1295 | U | 1296 | A | 1297 | A | 1298 | U | 1300 | G | 1301 | cWW | cwW |
| 3 | HL_4V88_215 | 4V88 | 0.2005 | 1 | T-loop related (H) | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW |
| 4 | HL_8C3A_024 | 8C3A | 0.2152 | 1 | 1 | LSU rRNA | C | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | U | 1078 | G | 1079 | cWW | cwW | |
| 5 | HL_5TBW_024 | 5TBW | 0.1593 | 1 | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
| 6 | HL_5J7L_024 | 5J7L | 0.1601 | 1 | T-loop related | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
| 7 | HL_4LFB_025 | 4LFB | 0.1482 | 1 | T-loop related | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
| 8 | HL_4V9F_013 | 4V9F | 0.1209 | 3 | 0 | LSU rRNA | G | 390 | U | 391 | U | 392 | G | 393 | G | 394 | U | 398 | C | 399 | cWW | cwW | |
| 9 | HL_8C3A_008 | 8C3A | 0.0640 | 3 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 10 | HL_5TBW_008 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 11 | HL_3R4F_001 | 3R4F | 0.1494 | 1 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAAUUG | 4 |
| GUUAAGUC | 3 |
| UUUGGGAAUG | 2 |
| GUUGGAUAUC | 1 |
| AUUGAGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 4 |
| UUAAGU | 3 |
| UUGGGAAU | 2 |
| UUGGAUAU | 1 |
| UUGAGU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop related (5)
- (5)
- T-loop related (H) (1)
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.17 | Max 0.29
Coloring options: