Motif HL_73183.1 Version HL_73183.1 of this group appears in releases 3.77 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 11-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3IGI_002 | 3IGI | 0.0000 | 1 | Pseudoknot geometry with G-bulge | A | Group II catalytic intron D1-D4-3 | U | 47 | G | 48 | A | 49 | G | 51 | G | 52 | C | 53 | A | 54 | G | 55 | A | 56 | A | 57 | G | 58 | U | 59 | A | 60 | A | 61 | cWW | tSH | tHW | cSH |
| 2 | HL_6ZDU_002 | 6ZDU | 0.9725 | 4 | Pseudoknot geometry with G-bulge | C | Chains: C,D | C | 1297 | G | 1298 | A | 1299 | A | 1303 | A | 1304 | U | 1305 | U | 1306 | G | 1307 | A | 1309 | A | 1310 | G | 1311 | U | 1312 | A | 1313 | G | 1314 | cWW | tSH | ntHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGGCAGAAGUAA | 1 |
| CGAAAAAAUUGGAAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGGCAGAAGUA | 1 |
| GAAAAAAUUGGAAGUA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry with G-bulge (2)
- Basepair signature
- cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
Coloring options: