Motif HL_73183.1 Version HL_73183.1 of this group appears in releases 3.77 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12		13		14		15	1-15	2-14	3-13	12-13
1	HL_6ZDU_002	6ZDU	0.0000	3	Pseudoknot geometry with G-bulge	C	Chains: C,D	C	1297	G	1298	A	1299	A	1300	A	1303	A	1304	U	1305	U	1306	G	1307	A	1309	A	1310	G	1311	U	1312	A	1313	G	1314	cWW	tSH	ntHW
2	HL_3IGI_002	3IGI	0.9725	0	Pseudoknot geometry with G-bulge	A	Group IIC intron	U	47	G	48	A	49	A	50	G	51	G	52	C	53	A	54	G	55	A	56	A	57	G	58	U	59	A	60	A	61	cWW	tSH	tHW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAAAAUUGGAAGUAG	1
UGAAGGCAGAAGUAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAAAAAUUGGAAGUA	1
GAAGGCAGAAGUA	1

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Pseudoknot geometry with G-bulge (2)
Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.97 | Avg 0.49 | Max 0.97

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