HL_81376.1

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	1-9	2-8	3-6
1	HL_1B23_004	1B23	0.5827	tRNA anticodon loop	R	tRNA	A	31	PSU	32	U	33	G	34	C	35	A	36	MIA	37	A	38	PSU	39	ncWW
2	HL_4WSM_209	4WSM	0.3768	tRNA anticodon loop	1K	tRNA	C	32	U	33	U	34	G	35	A	36	G	37	1MG	38	PSU	39	G	40	cWW
3	HL_5E81_235	5E81	0.2971	tRNA anticodon loop	1K	tRNA	A	31	C	32	U	33	U8U	34	U	35	U	36	T6A	37	A	38	PSU	39	cWW	ncWW
4	HL_3WFS_002	3WFS	0.2709	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
5	HL_4R4V_001	4R4V	0.2373	Anticodon loop related	A	VS ribozyme RNA	C	626	G	627	U	628	C	629	G	630	U	631	C	632	G	633	G	634	cWW	tSH
6	HL_7K98_002	7K98	0.2901	tRNA anticodon loop	C	tRNA	C	32	C	33	U	34	G	35	A	36	A	37	A	38	A	39	G	40	cWW	ntSH
7	HL_3TUP_002	3TUP	0.2510	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
8	HL_4LNT_144	4LNT	0.2355	tRNA anticodon loop	XY	messenger RNA	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
9	HL_6CAQ_034	6CAQ	0.2239	tRNA anticodon loop	W	RNA (15-mer)	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
10	HL_6GSK_203	6GSK	0.2335	tRNA anticodon loop	1K	tRNA	C	31	U	32	U	33	G	34	G	35	U	36	AET	37	A	38	G	39	cWW
11	HL_4YCO_002	4YCO	0.2095	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
12	HL_1U0B_002	1U0B	0.2397	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	G	34	C	35	A	36	A	37	A	38	U	39	cWW
13	HL_6GYV_002	6GYV	0.1956		A	Lariat-capping ribozyme	G	49	C	50	U	51	A	52	A	53	U	54	C	55	A	56	C	57	cWW	ncWW
14	HL_7OSM_116	7OSM	0.2053	tRNA anticodon loop	ASIT	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	YG	37	A	38	U	39	ncWW
15	HL_4V50_137	4V50	0.1352	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
16	HL_4V9Q_214	4V9Q	0.1307	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
17	HL_4TUE_142	4TUE	0.1084	tRNA anticodon loop (H)	XV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
18	HL_5J8B_109	5J8B	0.0967	tRNA anticodon loop (H)	x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
19	HL_6CFJ_107	6CFJ	0.0909	tRNA anticodon loop	1x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
20	HL_9MTS_102	9MTS	0.0881	tRNA anticodon loop	1x	tRNA	A	31	PSU	32	U	33	G	34	C	35	A	36	MIA	37	A	38	PSU	39	cWW
21	HL_8B0X_031	8B0X	0.0000	tRNA anticodon loop (H)	Z	tRNA	G	31	C	32	U	33	U	34	A	35	C	36	A	37	A	38	C	39	cWW		ntSHa
22	HL_7VNV_002	7VNV	0.1327	tRNA anticodon loop	A	tRNA	C	31	OMC	32	U	33	OMU	34	A	35	C	36	A	37	A	38	G	39	cWW		ntSHa
23	HL_7U2J_104	7U2J	0.1381		1w	tRNA	C	31	U	32	U	33	C	34	C	35	C	36	A	37	A	38	G	39	cWW
24	HL_7QR3_001	7QR3	0.1641	Anticodon loop related	C	Mammalian CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW		ntSHa
25	HL_4V9K_034	4V9K	0.2657	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
26	HL_4MGN_003	4MGN	0.3600	tRNA anticodon loop	B	tRNA-glycine	C	30	U	31	U	32	G	33	C	34	C	35	A	36	A	37	G	38	cWW
27	HL_4WZD_242	4WZD	0.4897	tRNA anticodon loop	3L	tRNA	A	32\|\|\|\|P_1	C	33\|\|\|\|P_1	U	34\|\|\|\|P_1	QUO	35\|\|\|\|P_1	U	36\|\|\|\|P_1	A	37\|\|\|\|P_1	MIA	38\|\|\|\|P_1	A	39\|\|\|\|P_1	PSU	40\|\|\|\|P_1	cWW	ncWW
28	HL_1N78_002	1N78	0.3701	tRNA anticodon loop	C	tRNA(Glu)	C	531	C	532	U	533	C	534	U	535	C	536	A	537	A	538	G	539	cWW	ncWW
29	HL_5E81_220	5E81	0.5557	tRNA anticodon loop	3L	tRNA	A	31	C	32	U	33	U	34	U	35	U	36	A	37	A	38	U	39	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUCAUAAC	3
A(PSU)UGCA(MIA)A(PSU)	2
ACUGAAAAU	2
AUUGAAAAU	2
GUCAUAAC	2
CUUGAGG	1
ACU(U8U)UU(T6A)A(PSU)	1
CGUCGUCGG	1
CCUGAAAAG	1
GUUCGGAC	1
CUUGGUAG	1
AUUGCAAAU	1
GCUAAUCAC	1
AUUGAA(YG)AU	1
GCUUACAAC	1
CUACAAG	1
CUUCCCAAG	1
GUUCACGUC	1
ACUCAUAAU	1
CUUGCCAAG	1
ACU(QUO)UA(MIA)A(PSU)	1
CCUCUCAAG	1
ACUUUUAAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUCAUAA	4
CUGAAAA	3
(PSU)UGCA(MIA)A	2
UUGAAAA	2
(5MC)UCAUAA	2
UUGAG(1MG)(PSU)	1
CU(U8U)UU(T6A)A	1
GUCGUCG	1
UUCGG(1MG)A	1
UUGGU(AET)A	1
UUGCAAA	1
CUAAUCA	1
UUGAA(YG)A	1
CUUACAA	1
(OMC)U(OMU)ACAA	1
UUCCCAA	1
UUCACGU	1
UUGCCAA	1
CU(QUO)UA(MIA)A	1
CUCUCAA	1
CUUUUAA	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_81376.1 Version HL_81376.1 of this group appears in releases 4.0 to 4.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_81376.1 Version HL_81376.1 of this group appears in releases 4.0 to 4.0

Download

Csv

Json