#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-6
1 HL_2QUS_0032QUS0.88350 AHammerhead ribozymeC42G43U44G45A46G47cWW
2 HL_2QUW_0032QUW0.91730 BHammerhead ribozyme, cleaved fragmentC42G43U44G45A46G47cWW
3 HL_4V88_2164V880.79130 A6 SSU rRNAC1359A1360U1361U1362U1363G1364cWW
4 HL_2Y9H_0072Y9H0.55390 NRNA (19-mer)C11G12C13G14U15G16cWW
5 HL_6D12_0016D120.00001 Chuman 7SK RNA stem-loop 4C309A310U311U313G314G315cWW
6 HL_6D12_0026D120.34241 Chuman 7SK RNA stem-loop 4C328A329U330U332G333G334cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUGAG2
CAUGUGG2
CAUUUG1
CGCGUG1
Non-Watson-Crick part of the motif
SequenceCounts
GUGA2
AUGUG2
AUUU1
GCGU1

Release history

Release3.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-R-R-R
Heat map statistics
Min 0.07 | Avg 0.62 | Max 0.98
Help

Coloring options:

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