Motif HL_86877.1 Version HL_86877.1 of this group appears in releases 3.84 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5KTJ_002 | 5KTJ | 0.0844 | 0 | A | Pistol ribozyme | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH |
| 2 | HL_6UFJ_004 | 6UFJ | 0.0000 | 0 | C | Pistol ribozyme | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH |
| 3 | HL_6UEY_004 | 6UEY | 0.0764 | 0 | C | Pistol ribozyme | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH |
| 4 | HL_5K7D_002 | 5K7D | 0.1497 | 0 | A | RNA 47-MER | G | 33 | C | 34 | C | 35 | C | 36 | U | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAAGC | 3 |
| GCCCUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAAAG | 3 |
| CCCUAAG | 1 |
Release history
| Release | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cSH-F-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.09 | Max 0.15
Coloring options: