Motif HL_87219.2 Version HL_87219.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	2-10	3-7	3-8	4-8
1	HL_4WSM_226	4WSM	0.7081	1	3L	tRNA	G	63	G	64	U	65	U	66	C	67	A	68	A	69	U	71	C	72	C	73	cWW	ncWW		ntWH
2	HL_4V88_208	4V88	0.3085	1	A6	SSU rRNA	G	997	A	998	U	999	C	1000	A	1001	G	1002	A	1003	A	1005	C	1006	C	1007	cWW
3	HL_4LFB_017	4LFB	0.0751	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
4	HL_5J7L_017	5J7L	0.0000	1	AA	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
5	HL_4V5O_056	4V5O	0.1696	1	BA	SSU rRNA	G	975	A	976	U	977	C	978	A	979	G	980	A	981	A	983	C	984	C	985	cWW
6	HL_5J7L_015	5J7L	0.3297	0	AA	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH			tSH
7	HL_4LFB_015	4LFB	0.3663	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH			tSH
8	HL_4V5O_054	4V5O	0.4608	0	BA	SSU rRNA	A	878	G	879	G	880	U	881	G	882	A	883	A	884	A	885	U	886	U	887	cWW				tSH
9	HL_4V88_206	4V88	0.4594	0	A6	SSU rRNA	A	900	G	901	G	902	U	903	G	904	A	905	A	906	A	907	U	908	U	909	cWW				ntSH
10	HL_4V8P_081	4V8P	0.3781	0	C2	5.8S rRNA	G	121	U	122	G	123	U	124	A	125	A	126	A	127	A	128	A	129	C	130	cWW	ncWW			ntSH
11	HL_5TBW_028	5TBW	0.6523	0	1	LSU rRNA	G	1266	U	1267	G	1268	U	1269	A	1270	A	1271	C	1272	A	1273	A	1274	C	1275	ncWW		ncWW
12	HL_3R9X_001	3R9X	0.6304	0	C	RNA301	A	1513	G	1514	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	C	1521	U	1522	cWW	ncWW				ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUCAGAUACC	2
GAUUAGAUACC	2
CGGUGAAAUG	2
AGGUGAAAUU	2
GGUUCAAGUCC	1
GUGUAAAAAC	1
GUGUAACAAC	1
AGGGGAACCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	4
AUCAGAUAC	2
AUUAGAUAC	2
GUUCAAGUC	1
UGUAAAAA	1
UGUAACAA	1
GGGGAACC	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (12)
Basepair signature: cWW-R-tSH-R-R-R-R
Heat map statistics: Min 0.07 | Avg 0.50 | Max 0.96

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