Motif HL_94309.1 Version HL_94309.1 of this group appears in releases 1.14 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3KTW_001 | 3KTW | 0.0000 | 0 | GNRA | C | SRP RNA | U | 163 | G | 164 | G | 165 | A | 166 | G | 167 | G | 168 | cWW | |
| 2 | HL_4IOA_045 | 4IOA | 0.9989 | 1 | GNRA | X | LSU rRNA | C | 1797 | G | 1798 | A | 1799 | A | 1800 | A | 1802 | G | 1803 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAGG | 1 |
| CGAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAG | 1 |
| GAACA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_94309.1 | Only in the parent motif |
|---|---|---|---|
| HL_34440.1 Compare | HL_3KTW_001 | HL_4IOA_045 | |
| HL_49036.3 Compare | HL_4IOA_045 | HL_3KTW_001 | HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_3Q1Q_010, HL_1XJR_001, HL_3U5H_042, HL_4IOA_004, HL_4A1B_041, HL_4BPP_030, HL_1S72_016 |
Children motifs
| Child motif | Common motif instances | Only in HL_94309.1 | Only in the child motif |
|---|---|---|---|
| HL_15291.1 Compare | HL_3KTW_001 | HL_4IOA_045 | |
| HL_74411.1 Compare | HL_4IOA_045 | HL_3KTW_001 | HL_2QBG_043, HL_4A1B_041, HL_1S72_022, HL_4A1B_052, HL_4AL5_001, HL_4CUV_042, HL_3D0U_003, HL_1VX6_042, HL_1VWW_043, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_1VX6_072, HL_4BPP_030, HL_4IOA_004, HL_1S72_016 |
- Annotations
-
- GNRA (2)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
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