#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_1S72_0221S720.55890GNRA (H)0 LSU rRNAU733U734C735A736A737G738cWW
2 HL_4IOA_0454IOA0.50611GNRAX LSU rRNAC1797G1798A1799A1800A1802G1803cWWtSH
3 HL_3D0U_0033D0U0.50811GNRAALysine Riboswitch RNAG121G122A123A124A126C127cWWtSH
4 HL_1XJR_0011XJR0.28751GNRAAs2m RNAG21G22A23G24A26C27cWWtSH
5 HL_2QBG_0432QBG0.21541B23S rRNAA1630G1631A1632G1633A1635U1636cWWtSH
6 HL_4A1B_0414A1B0.30691126S RRNAU1886U1887A1888G1889A1891G1892cWWntSH
7 HL_3U5H_0423U5H0.26471525S rRNAU1862G1863A1864A1865A1867G1868cWWtSH
8 HL_1S72_0161S720.28301GNRA (H)0 LSU rRNAU493C494A495G496A498G499cWWntSH
9 HL_4BPP_0304BPP0.00001A18S RRNAU1330A1331A1332A1333A1335A1336cWWntSH
10 HL_4AL5_0014AL50.24411GNRABRNA (20-mer)C10G11U12A13A15G16cWWtSH
11 HL_3Q1Q_0103Q1Q0.56360CTRNA (PHE)G37C38A39C40C41C42cWWntWH
12 HL_4IOA_0044IOA0.67570GNRA variationX LSU rRNAC133G134U135A136A137G138cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
UUCAAG1
CGAACAG1
GGAAUAC1
GGAGUAC1
AGAGAAU1
UUAGCAG1
UGAACAG1
UCAGAAG1
UAAAUAA1
CGUAUAG1
GCACCC1
CGUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAACA2
UCAA1
GAAUA1
GAGUA1
GAGAA1
UAGCA1
CAGAA1
AAAUA1
GUAUA1
CACC1
GUAA1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-042013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in HL_49036.3Only in the parent motif
HL_49036.2
Compare
HL_4IOA_045, HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_4A1B_041, HL_4IOA_004, HL_3U5H_042, HL_1S72_016HL_3Q1Q_010, HL_4BPP_030HL_2XZM_005
HL_67042.7
Compare
HL_3Q1Q_010HL_4IOA_045, HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_3U5H_042, HL_4IOA_004, HL_4A1B_041, HL_4BPP_030, HL_1S72_016HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_4A1B_059, HL_4A1C_006, HL_3V2F_015, HL_2XZM_009, HL_4B5R_002, HL_4B5R_003, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_2QBG_016, HL_3V2F_016, HL_4FAW_003, HL_4AOB_003, HL_4IOA_068, HL_3E5C_001, HL_4IOA_062, HL_4IOA_063, HL_2AW7_022, HL_2XZM_031, HL_2XZM_035, HL_2XZM_034, HL_3W3S_003, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2AW7_003, HL_3KTW_002, HL_1S72_045, HL_2QBG_028, HL_1S72_048, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_4IOA_019, HL_1FJG_024, HL_2AW7_013, HL_4IOA_015, HL_1FJG_028, HL_2AW7_016, HL_1Q96_001, HL_2XZM_027, HL_1MFQ_002, HL_3NKB_002, HL_2XZM_023, HL_2XZM_020, HL_3U5H_013, HL_3SD3_002, HL_3SUX_002, HL_1U9S_002, HL_3U5H_033, HL_1S72_036, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_3U5H_039, HL_1S72_070, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_4IOA_005, HL_2EZ6_001, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_3GX5_002, HL_2ZZM_003, HL_3V2F_062, HL_1FJG_019, HL_3V2F_067, HL_3V2F_069, HL_3U5H_010, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_3GX5_003, HL_1S72_028, HL_4JF2_001, HL_1Q96_003, HL_4IOA_030, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_2QBG_049, HL_2BTE_007, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_488D_002, HL_4IOA_057, HL_1MFQ_001, HL_4A1B_052, HL_4AOB_002, HL_2XZM_024, HL_3U5F_022, HL_3V2F_056, HL_3ADC_003, HL_1JID_001, HL_1KH6_002, HL_1S72_015, HL_1S72_017, HL_3P22_005, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_3U5H_011, HL_2HO7_004, HL_3U5F_015, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_4IOA_026, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_1GID_004, HL_3T4B_001, HL_4IOA_046, HL_3U5H_019, HL_4A1B_026, HL_1U6B_004, HL_1U6B_001, HL_4A1B_020, HL_1S72_009, HL_3AM1_003, HL_2PXV_001, HL_3DVZ_001, HL_4A1B_046, HL_4GMA_004, HL_3U5F_003, HL_2IL9_003, HL_3NPB_002, HL_1S72_023, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_4FNJ_001, HL_4IOA_070, HL_3P22_007, HL_4A1B_035, HL_2NZ4_016, HL_3V2F_032, HL_2NZ4_012, HL_1RLG_002, HL_3V7E_006, HL_4K50_001, HL_4K50_003, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_4IOA_014, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_4A1B_029, HL_3U5F_033, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_4IOA_033, HL_1NBS_007, HL_3CUN_001, HL_2OIU_005, HL_3U5F_026, HL_3IAB_001, HL_2QBG_036, HL_1U9S_004, HL_3V2F_029, HL_1G1X_003, HL_3D0U_004, HL_2XZM_015, HL_3V2F_027, HL_3V2F_020, HL_1G1X_001, HL_1FJG_016, HL_3V2F_044, HL_4FRG_002, HL_3U5H_065, HL_3U5H_066, HL_3V2F_045, HL_3U5H_060, HL_3U5H_036, HL_2QBG_048, HL_1S72_060, HL_3V2F_061, HL_1S72_065, HL_1S72_066, HL_2AW7_010, HL_4A1B_064

Children motifs

Child motifCommon motif instancesOnly in HL_49036.3Only in the child motif
HL_49036.4
Compare
HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_4A1B_041, HL_4BPP_030, HL_1S72_016HL_4IOA_004, HL_4IOA_045HL_4NVV_020, HL_2QBG_022
HL_94309.1
Compare
HL_4IOA_045HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_3Q1Q_010, HL_1XJR_001, HL_3U5H_042, HL_4IOA_004, HL_4A1B_041, HL_4BPP_030, HL_1S72_016HL_3KTW_001
HL_86077.1
Compare
HL_4IOA_004HL_4IOA_045, HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_4A1B_041, HL_4BPP_030, HL_1S72_016HL_1FJG_012, HL_4NVV_041, HL_2QBG_017, HL_2AW7_027
Annotations
  • (5)
  • GNRA (4)
  • GNRA (H) (2)
  • GNRA variation (1)
  • Basepair signature
    cWW-tSH-R-R
    Heat map statistics
    Min 0.18 | Avg 0.49 | Max 0.93
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.0711 s