Motif IL_71234.1 Version IL_71234.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_101 | 2ZJR | 0.7705 | 0 | Decoding loop related (H) | X | LSU rRNA | G | 2818 | G | 2819 | C | 2820 | * | G | 2846 | G | 2847 | A | 2848 | C | 2849 | cWW | cWW |
| 2 | IL_2QEK_002 | 2QEK | 0.6636 | 0 | A+B | HIV-1 subtype F DIS genomic RNA | C | 15 | A | 16 | C | 17 | * | G | 7 | A | 8 | A | 9 | G | 10 | cWW | cWW | |
| 3 | IL_1LNG_001 | 1LNG | 0.0000 | 0 | B | SRP S RNA | G | 152 | A | 153 | G | 154 | * | U | 175 | A | 176 | A | 177 | C | 178 | cWW | cWW | |
| 4 | IL_3F1H_106 | 3F1H | 0.5317 | 0 | A | 23S RRNA | G | 2843 | G | 2844 | G | 2845 | * | C | 2871 | G | 2872 | A | 2873 | C | 2874 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGC*GGAC | 1 |
| CAC*GAAG | 1 |
| GAG*UAAC | 1 |
| GGG*CGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GA | 2 |
| A*AA | 2 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_71234.1 | Only in the parent motif |
|---|---|---|---|
| IL_11363.1 Compare | IL_2ZJR_101, IL_2QEK_002 | IL_3F1H_106, IL_1LNG_001 | IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005 |
| IL_34635.2 Compare | IL_3F1H_106, IL_1LNG_001 | IL_2ZJR_101, IL_2QEK_002 | IL_3BNL_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_71234.1 | Only in the child motif |
|---|---|---|---|
| IL_01239.1 Compare | IL_2ZJR_101, IL_1LNG_001 | IL_2QEK_002, IL_3F1H_106 | IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 |
| IL_95015.1 Compare | IL_2QEK_002 | IL_2ZJR_101, IL_3F1H_106, IL_1LNG_001 | IL_3LOA_003, IL_2XZM_064, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_1S72_062, IL_2ZJR_063, IL_3O58_095 |
- Annotations
-
- (3)
- Decoding loop related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.42 | Avg 0.51 | Max 0.92
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