Motif IL_01643.2 Version IL_01643.2 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3BNQ_011 | 3BNQ | 1.5695 | 1 | C+D | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | G | 15 | C | 16 | A | 17 | G | 19 | * | C | 5 | A | 6 | C | 7 | C | 8 | cWW | cWW | |||
2 | IL_3D0U_002 | 3D0U | 1.5931 | 0 | Double sheared | A | Lysine Riboswitch RNA | C | 16 | G | 17 | A | 18 | G | 19 | * | C | 67 | G | 68 | A | 69 | G | 70 | cWW | tSH | tHS | cWW |
3 | IL_3BNQ_005 | 3BNQ | 1.5534 | 1 | A+B | A site of human mitochondrial ribosome, A chain | G | 15 | C | 16 | A | 17 | G | 19 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | cWW | |||
4 | IL_3BNP_003 | 3BNP | 1.3851 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | G | 14 | C | 15 | A | 16 | G | 18 | * | C | 5 | A | 6 | C | 7 | C | 8 | cWW | cWW | |||
5 | IL_1FJG_059 | 1FJG | 0.0000 | 0 | Double sheared (H) | A | SSU rRNA | G | 1416 | G | 1417 | A | 1418 | G | 1419 | * | U | 1481 | G | 1482 | A | 1483 | C | 1484 | cWW | tSH | tHS | cWW |
6 | IL_1SA9_001 | 1SA9 | 0.2327 | 0 | B+A | RNA (8-mer) | C | 111 | G | 112 | A | 113 | G | 114 | * | C | 103 | G | 104 | A | 105 | G | 106 | cWW | tSH | tHS | cWW | |
7 | IL_1SA9_002 | 1SA9 | 0.2430 | 0 | Double sheared | C+D | RNA (8-mer) | C | 203 | G | 204 | A | 205 | G | 206 | * | C | 211 | G | 212 | A | 213 | G | 214 | cWW | tSH | ntHS | cWW |
8 | IL_2ZJR_082 | 2ZJR | 0.2572 | 0 | Double sheared (H) | X | LSU rRNA | C | 2343 | G | 2344 | A | 2345 | G | 2346 | * | C | 2329 | G | 2330 | A | 2331 | G | 2332 | cWW | ntSH | ntHS | cWW |
9 | IL_3BNP_002 | 3BNP | 0.3078 | 1 | B+A | A site of human mitochondrial ribosome, B chain | G | 13 | C | 14 | A | 15 | G | 17 | * | C | 6 | A | 7 | C | 8 | C | 9 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCAAG*CACC | 4 |
CGAG*CGAG | 4 |
GGAG*UGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GA*GA | 5 |
CAA*AC | 4 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_01643.2 | Only in the parent motif |
---|---|---|---|
IL_01643.1 Compare | IL_3BNP_003, IL_3BNP_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_3BNQ_011, IL_3BNQ_005 | IL_2ZJR_057, IL_1S72_098, IL_1SAQ_002, IL_3F1H_044 |
Children motifs
Child motif | Common motif instances | Only in IL_01643.2 | Only in the child motif |
---|---|---|---|
IL_05994.1 Compare | IL_2ZJR_082, IL_1SA9_002, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001 | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_011, IL_3BNQ_005 | IL_2ZJR_057, IL_2QBZ_003, IL_3F1H_086, IL_1SAQ_002, IL_1S72_098, IL_3DIR_002 |
IL_13862.1 Compare | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_011, IL_3BNQ_005 | IL_2ZJR_082, IL_1SA9_002, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 |
- Annotations
-
- (5)
- Double sheared (H) (2)
- Double sheared (2)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.84 | Max 1.61
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