#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_3BNQ_0113BNQ1.56951C+DA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG15C16A17G19*C5A6C7C8cWWcWW
2 IL_3D0U_0023D0U1.59310Double shearedALysine Riboswitch RNAC16G17A18G19*C67G68A69G70cWWtSHtHScWW
3 IL_3BNQ_0053BNQ1.55341A+BA site of human mitochondrial ribosome, A chainG15C16A17G19*C7A8C9C10cWWcWW
4 IL_3BNP_0033BNP1.38511A+BA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG14C15A16G18*C5A6C7C8cWWcWW
5 IL_1FJG_0591FJG0.00000Double sheared (H)A SSU rRNAG1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
6 IL_1SA9_0011SA90.23270B+ARNA (8-mer)C111G112A113G114*C103G104A105G106cWWtSHtHScWW
7 IL_1SA9_0021SA90.24300Double shearedC+DRNA (8-mer)C203G204A205G206*C211G212A213G214cWWtSHntHScWW
8 IL_2ZJR_0822ZJR0.25720Double sheared (H)X LSU rRNAC2343G2344A2345G2346*C2329G2330A2331G2332cWWntSHntHScWW
9 IL_3BNP_0023BNP0.30781B+AA site of human mitochondrial ribosome, B chainG13C14A15G17*C6A7C8C9cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCAAG*CACC4
CGAG*CGAG4
GGAG*UGAC1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA5
CAA*AC4
Annotations
  • (5)
  • Double sheared (H) (2)
  • Double sheared (2)
  • Basepair signature
    Heat map statistics
    Min 0.09 | Avg 0.84 | Max 1.61
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