#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 8 9 10 11 12 13 14 15 161-141-162-62-153-64-57-148-129-13
1 IL_4IOA_0094IOA0.10262X LSU rRNAG492A493A494C495*G506A507G508U509G510A511A512A513A515G516A517C519tSScWWcSWtHHtHScWWcWBtWHtSH
2 IL_2QBG_0162QBG0.00002B23S rRNAG481A482A483C484*G496A497G498U499G500A501A502A503A505G506A507C509tSScWWcSWtHHtHScWWcWBtWHtSH
3 IL_4NVV_0154NVV0.12642A23S Ribosomal RNAG507A508A509C510*G521A522G523U524G525A526A527A528A530G531A532C534tSScWWcSWntHHtHScWWcWBtWHtSH
4 IL_3U5H_0153U5H0.31332525S rRNAG376A377A378C379*G390A391G392U393G394A395A396A397A399G400U401C403ntSScWWcSWtHScWWcWBtWHtSH
5 IL_4A1B_0124A1B0.30990126S RRNAG375A376A377C378*G389G390G391C392U393A394A395A396A397G398A399C400ntSScWWtHScWWncWB

3D structures

Complete motif including flanking bases
SequenceCounts
GAAC*GAGUGAAAGAGAAC1
GAAC*GAGUGAAAAAGAAC1
GAAC*GAGUGAAAUAGAGC1
GAAC*GAGUGAAAAAGUAC1
GAAC*GGGCUAAAAGAC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*AGUGAAAGAGAA1
AA*AGUGAAAAAGAA1
AA*AGUGAAAUAGAG1
AA*AGUGAAAAAGUA1
AA*GGCUAAAAGA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_02359.4Only in the parent motif
IL_02359.3
Compare
IL_3U5H_015, IL_4IOA_009, IL_4A1B_012, IL_2QBG_016IL_4NVV_015IL_3V2F_014

Children motifs

Child motifCommon motif instancesOnly in IL_02359.4Only in the child motif
IL_02359.5
Compare
IL_4NVV_015, IL_3U5H_015, IL_4IOA_009, IL_4A1B_012, IL_2QBG_016IL_4CUV_018
Annotations
  • (5)
  • Basepair signature
    cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.20 | Max 0.36
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