#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3break 4 51-52-43-4
1 IL_4IOA_1024IOA0.74912Decoding loop related (H)XG2818G2819C2820*G2846C2849cWWcWW
2 IL_2ET8_0022ET80.71542Decoding loop relatedA+BC6A7C8*G38G41cWWcWW
3 IL_2O3X_0022O3X0.72532Decoding loop relatedA+BC7A8C9*G39G42cWWcWW
4 IL_3C3Z_0033C3Z0.73372Decoding loop relatedA+BC15A16C17*G7G10cWWcWW
5 IL_3C3Z_0023C3Z0.75702Decoding loop relatedB+AC15A16C17*G7G10cWWcWW
6 IL_1ZZ5_0011ZZ50.76482Decoding loop relatedB+AC26A27C28*G7G10cWWcWW
7 IL_1ZZ5_0031ZZ50.78952Decoding loop relatedD+CC26A27C28*G7G10cWWcWW
8 IL_4ZC7_0034ZC70.74742Decoding loop relatedB+AC30G31U32*A16G19cWWncWW
9 IL_1T0E_0011T0E0.63092Decoding loop relatedC+AC16A17C18*G7G10||AcWWcWW
10 IL_1ZX7_0031ZX70.58672Decoding loop relatedD+CC26A27C28*G7G10cWWcWW
11 IL_1ZX7_0051ZX70.50472Decoding loop relatedF+EC26A27C28*G7G10cWWcWW
12 IL_2O3X_0032O3X0.57542Decoding loop relatedB+AC30A31C32*G16G19cWWcWW
13 IL_4IOA_0464IOA0.49931Intercalated cWW (H)XG1241A1242G1243*U1232C1234cWWcWW
14 IL_2ET8_0012ET80.37701Stack and bulgeB+AG41U42C43*G4C6cWWcWW
15 IL_2O3X_0012O3X0.36131Stack and bulgeB+AG42U43C44*G5C7cWWcWW
16 IL_5VCI_0055VCI0.47310Not an internal loopA+BG13C14C15*G22C1cWWcWW
17 IL_4WF9_0474WF90.32211Intercalated cWWXG1266A1267C1268*G1257U1259cWWcWW
18 IL_4LFB_0414LFB0.41350Single stack bendAG1002G1003G1003|||A*C1038C1039cWWcWW
19 IL_4V83_2364V830.39650Single stack bendCVC6155A6156A6157*U6172G6173cWWcWW
20 IL_5TBW_3755TBW0.30420Single stack bendASC47U48G49*C29G30cWWcWW
21 IL_5TBW_0095TBW0.27520Single stack bend1C163A164A165*U257G258cWWcWW
22 IL_4IOA_0214IOA0.19470Single stack bend (H)XG951A952G953*C850C851cWWcWW
23 IL_4WF9_0284WF90.23230Single stack bendXG984A985G986*C882C883cWWcWW
24 IL_4Y4O_2014Y4O0.18100Single stack bend (H)2AG940A941G942*C837C838cWWcWW
25 IL_5J7L_2665J7L0.17500Single stack bendDAG940A941G942*C837C838cWWncWW
26 IL_5TBW_0045TBW0.19200Single stack bend1G56A57G58*C27C28cWWcWW
27 IL_4V9F_0054V9F0.21100Single stack bend0G182A183G184*C153C154cWWcWW
28 IL_4WF9_0074WF90.12890Single stack bendXG215A216G217*C186C187cWWcWW
29 IL_4Y4O_1834Y4O0.12050Single stack bend (H)2AG212A213G214*C183C184cWWcWW
30 IL_4IOA_0054IOA0.00000Single stack bend (H)XA189A190G191*C160U161cWWcWW
31 IL_5J7L_2495J7L0.19780Single stack bendDAG212A213G214*C183C184cWWcWW
32 IL_4V9F_0814V9F0.24170Single stack bend0U2436A2437G2438*C2454A2455cWWcWW
33 IL_4IOA_0564IOA0.28100Single stack bend (H)XA1463A1464G1465*C1477U1478cWWncWWcWW
34 IL_5J7L_0325J7L0.29730Single stack bendAAA746A747G748*C658U659cWWcWW
35 IL_5J7L_0445J7L0.37340Single stack bendAAG1041A1042G1043*C998C999cWWcWW
36 IL_5J7L_2695J7L0.37910Single stack bendDAG926A927A928*U850C851cWWcWW
37 IL_5TBW_0355TBW0.40720Single stack bend1U1111A1112G1113*C969A970cWWcWW
38 IL_4WF9_0894WF90.36450Single stack bendXC2525C2526U2527*A2480G2481cWWcWW
39 IL_4IOA_0854IOA0.41610XC2477C2478U2479*A2432G2433cWWcWW
40 IL_4Y4O_2664Y4O0.456202AC2498C2499U2500*A2453G2454cWWcWW
41 IL_5TBW_0815TBW0.52820Single stack bend1C1951G1952G1953*C2094G2095cWWcWW
42 IL_3MOJ_0043MOJ0.51730Single stack bendAC2540A2541A2542*U2522G2523cWWcWW
43 IL_6FZ0_0016FZ00.61120Single stack bendAC46U47A48*U20G21cWWcWW
44 IL_2QWY_0082QWY0.59870Single stack bendCC43U44A45*U21G22cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC10
CAC*GAAG9
CAA*UG3
AAG*CU3
CCU*AG3
GUC*GUC2
UAG*CA2
CUA*UG2
GGC*GGAC1
CGU*AAAG1
GAAG*CAC1
GAG*UAC1
GCC*GC1
GAC*GAU1
GGG*CC1
CUG*CG1
GAA*UC1
CGG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
A*19
A*AA9
C*4
U*3
A*A2
U*U2
G*2
G*GA1
G*AA1
AA*A1

Release history

Release3.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.45
Date2019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-26
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (20)
  • Decoding loop related (11)
  • Single stack bend (H) (5)
  • Stack and bulge (2)
  • (2)
  • Intercalated cWW (H) (1)
  • Decoding loop related (H) (1)
  • Intercalated cWW (1)
  • Not an internal loop (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.06 | Avg 0.53 | Max 0.98
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