IL_04038.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	2-4	2-5	3-4
1	IL_4IOA_102	4IOA	0.7491	2		X	LSU rRNA	G	2818	G	2819	C	2820	*	G	2846	C	2849	cWW			cWW
2	IL_2ET8_002	2ET8	0.7154	2	Decoding loop related	A+B	RNA (22-mer)	C	6	A	7	C	8	*	G	38	G	41	cWW			cWW
3	IL_2O3X_002	2O3X	0.7253	2	Decoding loop related	A+B	RNA (23-mer)	C	7	A	8	C	9	*	G	39	G	42	cWW			cWW
4	IL_3C3Z_003	3C3Z	0.7337	2	Decoding loop related	A+B	HIV-1 subtype F genomic RNA	C	15	A	16	C	17	*	G	7	G	10	cWW			cWW
5	IL_3C3Z_002	3C3Z	0.7570	2	Decoding loop related	B+A	HIV-1 subtype F genomic RNA	C	15	A	16	C	17	*	G	7	G	10	cWW			cWW
6	IL_1ZZ5_001	1ZZ5	0.7648	2	Decoding loop related	B+A	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW			cWW
7	IL_1ZZ5_003	1ZZ5	0.7895	2	Decoding loop related	D+C	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW			cWW
8	IL_4ZC7_003	4ZC7	0.7474	2	Decoding loop related	B+A	RNA duplex	C	30	G	31	U	32	*	A	16	G	19	cWW			cWW
9	IL_1T0E_001	1T0E	0.6309	2	Decoding loop related	C+A	RNA (17-mer)	C	16	A	17	C	18	*	G	7	G	10\|\|A	cWW			cWW
10	IL_1ZX7_003	1ZX7	0.5867	2	Decoding loop related	D+C	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW			cWW
11	IL_1ZX7_005	1ZX7	0.5047	2	Decoding loop related	F+E	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW			cWW
12	IL_2O3X_003	2O3X	0.5754	2	Decoding loop related	B+A	RNA (23-mer)	C	30	A	31	C	32	*	G	16	G	19	cWW			cWW
13	IL_4IOA_046	4IOA	0.4993	1		X	LSU rRNA	G	1241	A	1242	G	1243	*	U	1232	C	1234	cWW			cWW
14	IL_2ET8_001	2ET8	0.3770	1	Stack and bulge	B+A	RNA (22-mer)	G	41	U	42	C	43	*	G	4	C	6	cWW			cWW
15	IL_2O3X_001	2O3X	0.3613	1	Stack and bulge	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	C	7	cWW			cWW
16	IL_5VCI_005	5VCI	0.4731	0	Not an internal loop	A+B	RNA (22-mer) + RNA (12-mer)	G	13	C	14	C	15	*	G	22	C	1	cWW			cWW
17	IL_4WF9_047	4WF9	0.3221	1	Intercalated cWW	X	LSU rRNA	G	1266	A	1267	C	1268	*	G	1257	U	1259	cWW			cWW
18	IL_4LFB_041	4LFB	0.4135	0	Single stack bend	A	SSU rRNA	G	1002	G	1003	G	1003\|\|\|A	*	C	1038	C	1039	cWW	ncWW	ncWS	cWW
19	IL_4V83_236	4V83	0.3965	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW	ncWW		cWW
20	IL_5TBW_375	5TBW	0.3042	0	Single stack bend	AS	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW			cWW
21	IL_5TBW_009	5TBW	0.2752	0	Single stack bend	1	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW	ncWW		cWW
22	IL_4IOA_021	4IOA	0.1947	0		X	LSU rRNA	G	951	A	952	G	953	*	C	850	C	851	cWW			cWW
23	IL_4WF9_028	4WF9	0.2323	0	Single stack bend	X	LSU rRNA	G	984	A	985	G	986	*	C	882	C	883	cWW			cWW
24	IL_4Y4O_201	4Y4O	0.1810	0		2A	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW			cWW
25	IL_5J7L_266	5J7L	0.1750	0	Single stack bend	DA	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW			ncWW
26	IL_5TBW_004	5TBW	0.1920	0	Single stack bend	1	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW	ncWW		cWW
27	IL_4V9F_005	4V9F	0.2110	0	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW			cWW
28	IL_4WF9_007	4WF9	0.1289	0	Single stack bend	X	LSU rRNA	G	215	A	216	G	217	*	C	186	C	187	cWW	ncWW		cWW
29	IL_4Y4O_183	4Y4O	0.1205	0		2A	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	ncWW		cWW
30	IL_4IOA_005	4IOA	0.0000	0		X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW			cWW
31	IL_5J7L_249	5J7L	0.1978	0	Single stack bend	DA	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	ncWW		cWW
32	IL_4V9F_081	4V9F	0.2417	0	Single stack bend	0	LSU rRNA	U	2436	A	2437	G	2438	*	C	2454	A	2455	cWW	ncWW		cWW
33	IL_7KGA_003	7KGA	0.3064	0	Single stack bend	A	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW	ncWW		cWW
34	IL_4IOA_056	4IOA	0.2810	0		X	LSU rRNA	A	1463	A	1464	G	1465	*	C	1477	U	1478	cWW	ncWW		cWW
35	IL_5J7L_032	5J7L	0.2973	0	Single stack bend	AA	SSU rRNA	A	746	A	747	G	748	*	C	658	U	659	cWW	ncWW		cWW
36	IL_5J7L_044	5J7L	0.3734	0	Single stack bend	AA	SSU rRNA	G	1041	A	1042	G	1043	*	C	998	C	999	cWW		ncWW	cWW
37	IL_5J7L_269	5J7L	0.3791	0	Single stack bend	DA	LSU rRNA	G	926	A	927	A	928	*	U	850	C	851	cWW			cWW
38	IL_5TBW_035	5TBW	0.4072	0	Single stack bend	1	LSU rRNA	U	1111	A	1112	G	1113	*	C	969	A	970	cWW			cWW
39	IL_4WF9_089	4WF9	0.3645	0	Single stack bend	X	LSU rRNA	C	2525	C	2526	U	2527	*	A	2480	G	2481	cWW			cWW
40	IL_4IOA_085	4IOA	0.4161	0		X	LSU rRNA	C	2477	C	2478	U	2479	*	A	2432	G	2433	cWW			cWW
41	IL_4Y4O_266	4Y4O	0.4562	0		2A	LSU rRNA	C	2498	C	2499	U	2500	*	A	2453	G	2454	cWW			cWW
42	IL_5TBW_081	5TBW	0.5282	0	Single stack bend	1	LSU rRNA	C	1951	G	1952	G	1953	*	C	2094	G	2095	cWW			cWW
43	IL_3MOJ_004	3MOJ	0.5173	0	Single stack bend	A	LSU rRNA	C	2540	A	2541	A	2542	*	U	2522	G	2523	cWW			cWW
44	IL_6FZ0_001	6FZ0	0.6112	0	Single stack bend	A	SAM-V riboswitch	C	46	U	47	A	48	*	U	20	G	21	cWW			cWW
45	IL_2QWY_008	2QWY	0.5987	0	Single stack bend	C	SAM-II riboswitch	C	43	U	44	A	45	*	U	21	G	22	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAC*GAAG	10
GAG*CC	10
CAA*UG	3
AAG*CU	3
CCU*AG	3
GUC*GUC	2
UAG*CA	2
CUA*UG	2
GGC*GGAC	1
CGU*AAAG	1
GAG*UAC	1
GCC*GC	1
GAC*GAU	1
GGG*CC	1
CUG*CG	1
ACU*AU	1
GAA*UC	1
CGG*CG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	19
A*AA	10
C*	5
U*	3
A*A	2
U*U	2
G*	2
G*GA	1
G*AA	1

Release history

Release	3.46	3.47
Date	2021-06-23	2021-07-21
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_04038.2 Version IL_04038.2 of this group appears in releases 3.46 to 3.47 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_04038.2 Version IL_04038.2 of this group appears in releases 3.46 to 3.47

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Csv

Json