IL_04038.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_2QWY_008	2QWY	0.5251	0	Single stack bend	C	SAM-II riboswitch	C	43	U	44	A	45	*	U	21	G	22	cWW	cWW
2	IL_6FZ0_001	6FZ0	0.5492	0	Single stack bend	A	SAM-V riboswitch	C	46	U	47	A	48	*	U	20	G	21	cWW	cWW
3	IL_5TBW_081	5TBW	0.6039	0	Single stack bend	1	LSU rRNA	C	1951	G	1952	G	1953	*	C	2094	G	2095	cWW	cWW
4	IL_5TBW_035	5TBW	0.5479	0	Single stack bend	1	LSU rRNA	U	1111	A	1112	G	1113	*	C	969	A	970	cWW	cWW
5	IL_4WF9_089	4WF9	0.5227	0	Single stack bend	X	LSU rRNA	C	2525	C	2526	U	2527	*	A	2480	G	2481	cWW	cWW
6	IL_7RQB_091	7RQB	0.6157	0	Single stack bend	1A	LSU rRNA	C	2498	C	2499	U	2500	*	A	2453	G	2454	cWW	cWW
7	IL_7A0S_083	7A0S	0.5259	0	Single stack bend	X	LSU rRNA	C	2477	C	2478	U	2479	*	A	2432	G	2433	cWW	cWW
8	IL_5J7L_269	5J7L	0.5116	0	Single stack bend	DA	LSU rRNA	G	926	A	927	A	928	*	U	850	C	851	cWW	cWW
9	IL_5J7L_044	5J7L	0.4522	0	Single stack bend	AA	SSU rRNA	G	1041	A	1042	G	1043	*	C	998	C	999	cWW	cWW
10	IL_5J7L_032	5J7L	0.4109	0	Single stack bend	AA	SSU rRNA	A	746	A	747	G	748	*	C	658	U	659	cWW	cWW
11	IL_7A0S_054	7A0S	0.4250	0	Single stack bend	X	LSU rRNA	A	1463	A	1464	G	1465	*	C	1477	U	1478	cWW	cWW
12	IL_7KGA_003	7KGA	0.4306	0	Single stack bend	A	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW	cWW
13	IL_4V9F_081	4V9F	0.3952	0	Single stack bend	0	LSU rRNA	U	2436	A	2437	G	2438	*	C	2454	A	2455	cWW	cWW
14	IL_5J7L_249	5J7L	0.4202	0	Single stack bend	DA	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	cWW
15	IL_7A0S_005	7A0S	0.3352	0	Single stack bend	X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW	cWW
16	IL_7RQB_005	7RQB	0.3968	0	Single stack bend	1A	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	cWW
17	IL_4WF9_007	4WF9	0.4004	0	Single stack bend	X	LSU rRNA	G	215	A	216	G	217	*	C	186	C	187	cWW	cWW
18	IL_4V9F_005	4V9F	0.4460	0	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW	cWW
19	IL_5TBW_004	5TBW	0.4568	0	Single stack bend	1	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW	cWW
20	IL_5J7L_266	5J7L	0.4420	0	Single stack bend	DA	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW	ncWW
21	IL_7RQB_024	7RQB	0.4054	0	Single stack bend	1A	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW	cWW
22	IL_4WF9_028	4WF9	0.4131	0	Single stack bend	X	LSU rRNA	G	984	A	985	G	986	*	C	882	C	883	cWW	cWW
23	IL_7A0S_022	7A0S	0.4090	0	Single stack bend	X	LSU rRNA	G	951	A	952	G	953	*	C	850	C	851	cWW	cWW
24	IL_5TBW_009	5TBW	0.3426	0	Single stack bend	1	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW	cWW
25	IL_5TBW_375	5TBW	0.3438	0	Single stack bend	AS	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW	cWW
26	IL_4V83_236	4V83	0.5168	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW	cWW
27	IL_4LFB_041	4LFB	0.5054	0	Single stack bend	A	SSU rRNA	G	1002	G	1003	G	1003\|\|\|A	*	C	1038	C	1039	cWW	cWW
28	IL_4WF9_047	4WF9	0.2338	1	Intercalated cWW	X	LSU rRNA	G	1266	A	1267	C	1268	*	G	1257	U	1259	cWW	cWW
29	IL_2ET8_001	2ET8	0.1220	1	Stack and bulge	B+A	RNA (22-mer)	G	41	U	42	C	43	*	G	4	C	6	cWW	cWW
30	IL_2O3X_001	2O3X	0.0000	1	Stack and bulge	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	C	7	cWW	cWW
31	IL_5VCI_005	5VCI	0.1781	0	Not an internal loop	A+B	RNA (22-mer) + RNA (12-mer)	G	13	C	14	C	15	*	G	22	C	1	cWW	cWW
32	IL_7A0S_044	7A0S	0.3582	1	Intercalated cWW	X	LSU rRNA	G	1241	A	1242	G	1243	*	U	1232	C	1234	cWW	cWW
33	IL_2O3X_003	2O3X	0.3761	2	Decoding loop related	B+A	RNA (23-mer)	C	30	A	31	C	32	*	G	16	G	19	cWW	cWW
34	IL_7A0S_100	7A0S	0.5192	2	Decoding loop related	X	LSU rRNA	G	2818	G	2819	C	2820	*	G	2846	C	2849	cWW	cWW
35	IL_2ET8_002	2ET8	0.4981	2	Decoding loop related	A+B	RNA (22-mer)	C	6	A	7	C	8	*	G	38	G	41	cWW	cWW
36	IL_2O3X_002	2O3X	0.5116	2	Decoding loop related	A+B	RNA (23-mer)	C	7	A	8	C	9	*	G	39	G	42	cWW	cWW
37	IL_3C3Z_003	3C3Z	0.5130	2	Decoding loop related	A+B	HIV-1 subtype F genomic RNA	C	15	A	16	C	17	*	G	7	G	10	cWW	cWW
38	IL_3C3Z_002	3C3Z	0.5257	2	Decoding loop related	B+A	HIV-1 subtype F genomic RNA	C	15	A	16	C	17	*	G	7	G	10	cWW	cWW
39	IL_1ZZ5_001	1ZZ5	0.5469	2	Decoding loop related	B+A	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW	cWW
40	IL_1ZZ5_003	1ZZ5	0.5842	2	Decoding loop related	D+C	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW	cWW
41	IL_4ZC7_003	4ZC7	0.5268	2	Decoding loop related	B+A	RNA duplex	C	30	G	31	U	32	*	A	16	G	19	cWW	ncWW
42	IL_1T0E_001	1T0E	0.4247	2	Decoding loop related	C+A	RNA (17-mer)	C	16	A	17	C	18	*	G	7	G	10\|\|A	cWW	cWW
43	IL_1ZX7_003	1ZX7	0.3651	2	Decoding loop related	D+C	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW	cWW
44	IL_1ZX7_005	1ZX7	0.3222	2	Decoding loop related	F+E	RNA (14-mer)	C	26	A	27	C	28	*	G	7	G	10	cWW	cWW
45	IL_3MOJ_004	3MOJ	0.5514	0	Single stack bend	A	LSU rRNA	C	2540	A	2541	A	2542	*	U	2522	G	2523	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	10
CAC*GAAG	9
CCU*AG	3
AAG*CU	3
CAA*UG	3
CUA*UG	2
UAG*CA	2
GUC*GUC	2
CGG*CG	1
GAA*UC	1
ACU*AU	1
CUG*CG	1
GGG*CC	1
GAC*GAU	1
GCC*GC	1
GAG*UAC	1
GGC*GGAC	1
CGU*AAAG	1
GAAG*CAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	19
A*AA	9
C*	5
U*	3
G*	2
A*A	2
U*U	2
G*GA	1
G*AA	1
AA*A	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_04038.4 Version IL_04038.4 of this group appears in releases 3.54 to 3.76 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_04038.4 Version IL_04038.4 of this group appears in releases 3.54 to 3.76

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Csv

Json