1 IL_5MSF_002 5MSF 0.9952 1 S RNA (18-mer) C 13||||P_1 A 14||||P_1 C 15||||P_1 * G 3||||P_1 G 4||||P_1 G 6||||P_1 cWW cWW cWW
2 IL_5MSF_001 5MSF 0.9362 1 Isolated non-canonical cWW pair R RNA (18-mer) C 13||||P_1 A 14||||P_1 C 15||||P_1 * G 3||||P_1 G 4||||P_1 G 6||||P_1 cWW cWW cWW
3 IL_405D_001 405D 0.7832 0 B+A RNA (16-mer) A 26 A 27 U 28 * A 5 C 6 U 7 cWW cWW cWW
4 IL_3GLP_003 3GLP 0.6150 0 D+C RNA (8-mer) C 5 U 6 G 7 * C 2 U 3 G 4 cWW
5 IL_3HL2_002 3HL2 0.6204 0 E Selenocysteine transfer RNA C 65||A U 66||A U 67||A|A * A 5||A|C U 6||A G 7||A ncWW cWW cWw cWW
6 IL_3MEI_002 3MEI 0.6281 0 Isolated non-canonical cWW pair A+B RNA (23-mer) G 8 C 9 C 10 * G 13 C 14 C 15 cWW ncBW cWW
7 IL_3LOA_003 3LOA 0.6246 1 Decoding loop with one bulged A B+A RNA (23-mer) G 1491 A 1493 G 1494 * C 1407 A 1408 C 1409 cWW cWW
8 IL_3GLP_004 3GLP 0.6177 0 D+C RNA (8-mer) C 2 U 3 G 4 * C 5 U 6||A G 7 cWW
9 IL_3F1H_081 3F1H 0.5193 0 A LSU rRNA C 2179 U 2180 G 2181 * C 2108 U 2109 G 2110 cWW ncwW cWW
10 IL_3F1H_054 3F1H 0.5096 1 A LSU rRNA U 1433 A 1434 G 1435 * C 1557 A 1558 G 1560 cWW cWW
11 IL_3F1H_094 3F1H 0.5299 2 A LSU rRNA C 2510 U 2511 C 2512 * G 2574 C 2575 G 2578 cWW ncWW cWW
12 IL_3F1H_113 3F1H 0.5299 0 B 5S rRNA U 80 G 81 G 82 * C 94 U 95 G 96 cWW cWW
13 IL_3FO4_001 3FO4 0.5429 0 A Purine riboswitch U 25 C 26 G 27 * C 43 A 44 A 45 cWW cWWa cWW
14 IL_3NJ6_001 3NJ6 0.6282 0 A RNA (10-mer) C 3 A 4 G 5 * C 6||||6_555 A 7||||6_555 G 8||||6_555 cWW cWW
15 IL_3GLP_002 3GLP 0.5810 0 A+B RNA (8-mer) C 5 U 6 G 7 * C 2||A U 3||A G 4 ncWw cWW
16 IL_3F1H_062 3F1H 0.5151 0 A LSU rRNA C 1663 A 1664 A 1665 * U 1995 C 1996 G 1997 cWW tWW cWW
17 IL_3NJ7_006 3NJ7 0.7619 0 F+E RNA (10-mer) C 3 A 4 G 5 * C 6 A 7 G 8 cWW cWW
18 IL_3NJ7_003 3NJ7 0.6536 0 Isolated non-canonical cWW pair C+D RNA (10-mer) C 3 A 4 G 5 * C 6 A 7 G 8 cWW cWW
19 IL_3HHN_002 3HHN 0.6184 0 C Class I ligase ribozyme, self-ligation product G 87 G 88 U 89 * A 102 A 103 C 104 cWW ncWW cWW
20 IL_3F1H_080 3F1H 0.5164 0 A LSU rRNA U 2232 U 2233 G 2234 * C 2085 U 2086 G 2087 cWW cWw cWW
21 IL_3NJ6_002 3NJ6 0.6405 0 A RNA (10-mer) C 3||||6_555 A 4||||6_555 G 5||||6_555 * C 6 A 7 G 8 cWW cWW
22 IL_3F1H_016 3F1H 0.3980 0 A LSU rRNA C 806 U 807 G 808 * C 672 C 673 G 674 cWW cWW cWW
23 IL_3BNT_001 3BNT 0.3514 0 Isolated non-canonical cWW pair A A site of human mitochondrial ribosome G 18||||4_665 U 19||||4_665 C 20||||4_665 * G 4 U 5 C 6 cWW cWw cWW
24 IL_3CUN_002 3CUN 0.3600 0 C RNA (92-MER) C 87 A 88 G 89 * U 57 G 58 G 59 cWW cWW ncWW
25 IL_3BNP_004 3BNP 0.3392 0 A+B A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain G 18 U 19 C 20 * G 3 U 4 C 5 cWW cWw cWW
26 IL_2ZJR_042 2ZJR 0.3130 0 Isolated non-canonical cWW pair (H) X LSU rRNA C 1252 C 1253 G 1254 * C 1218 C 1219 G 1220 cWW ncBW cWW
27 IL_2ZJR_010 2ZJR 0.2946 0 X LSU rRNA A 584 U 585 G 586 * C 573 C 574 U 575 cWW cWW cWW
28 IL_1Z7F_002 1Z7F 0.2512 0 Isolated non-canonical cWW pair A RNA (16-mer) A 10 A 11 U 12 * A 5||||6_765 C 6||||6_765 U 7||||6_765 cWW cWW cWW
29 IL_1ZEV_002 1ZEV 0.2536 0 A+B RNA (18-mer) C 4||A U 5||A G 6||A * C 13||A U 14||A G 15||A cWW cWW
30 IL_1O9M_003 1O9M 0.2249 1 A+B EUBACTERIAL A-SITE G 1491 A 1493 G 1494 * C 1407 A 1408 C 1409 cWW cWW
31 IL_1T0D_002 1T0D 0.2357 0 B+A RNA (16-mer) G 24 U 25 C 26 * G 10 U 11 C 12 cWW cWw cWW
32 IL_1S72_047 1S72 0.2277 0 0 LSU rRNA C 1303 U 1304 C 1305 * G 1349 U 1350 G 1351 cWW cWw cWW
33 IL_1S72_024 1S72 0.2277 0 Isolated non-canonical cWW pair (H) 0 LSU rRNA C 899 U 900 G 901 * C 763 C 764 G 765 cWW cWW cWW
34 IL_1KFO_002 1KFO 0.1734 0 Isolated non-canonical cWW pair A RNA (19-mer) G 11||||8_555 A 12||||8_555 G 13||||8_555 * C 6 C 7 U 8 cWW cWW cWW
35 IL_2ZJR_100 2ZJR 0.3251 1 X LSU rRNA G 2813 G 2814 C 2815 * G 2852 U 2853 C 2855 cWW cWW cWW
36 IL_3BNP_001 3BNP 0.3376 0 B+A A site of human mitochondrial ribosome, B chain G 17 U 18 C 19 * G 4 U 5 C 6 cWW cWw cWW
37 IL_3BNQ_001 3BNQ 0.3415 0 B+A A site of human mitochondrial ribosome, A chain G 19 U 20 C 21 * G 5 U 6 C 7 cWW ncWw cWW
38 IL_2ZJR_036 2ZJR 0.3120 1 Isolated non-canonical cWW pair (H) X LSU rRNA C 1132 G 1133 C 1134 * G 1042 A 1043 G 1045 cWW cWW cWW
39 IL_2ZJR_025 2ZJR 0.3014 0 Isolated non-canonical cWW pair (H) X LSU rRNA C 864 A 865 U 866 * A 936 C 937 G 938 cWW cWW cWW
40 IL_2QEK_001 2QEK 0.2926 1 Isolated non-canonical cWW pair B+A HIV-1 subtype F DIS genomic RNA C 15 A 16 C 17 * G 7 A 8 G 10 cWW cWw cWW
41 IL_2FQN_004 2FQN 0.2760 0 A+B RNA (23-mer) G 19 U 20 C 21 * G 28 U 29 C 30 cWW cWw cWW
42 IL_1ZX7_008 1ZX7 0.2697 0 H+G RNA (14-mer) G 24 U 25 C 26 * G 10 U 11 C 12 cWW cWw cWW
43 IL_1ZX7_006 1ZX7 0.2687 0 Isolated non-canonical cWW pair F+E RNA (14-mer) G 24 U 25 C 26 * G 10 U 11 C 12 cWW cWw cWW
44 IL_2O3Y_004 2O3Y 0.2840 0 Isolated non-canonical cWW pair A+B RNA (23-mer) G 19 U 20 C 21 * G 28 U 29 C 30 cWW cWw cWW
45 IL_2OE5_001 2OE5 0.2840 0 Isolated non-canonical cWW pair A+B RNA (16-mer) + RNA (17-mer) G 1405 U 1406 C 1407 * G 1494 U 1495 C 1496 cWW cWw cWW
46 IL_1YZ9_002 1YZ9 0.2511 0 Isolated non-canonical cWW pair E+F RNA (11-mer) A 4 C 5 U 6 * A 15 C 16 U 17 cWW ncBW cWW
47 IL_1O9M_004 1O9M 0.2259 0 A+B EUBACTERIAL A-SITE G 1494 U 1495 C 1496 * G 1405 U 1406 C 1407 cWW cWw cWW
48 IL_2ZJR_030 2ZJR 0.3032 0 Isolated non-canonical cWW pair (H) X LSU rRNA U 974 C 975 C 976 * G 963 A 964 G 965 cWW cWW cWW
49 IL_2ZJR_053 2ZJR 0.3183 1 Isolated non-canonical cWW pair (H) X LSU rRNA U 1447 A 1448 C 1449 * G 1573 A 1574 G 1576 cWW ncWw cWW
50 IL_2O3V_004 2O3V 0.2797 0 Isolated non-canonical cWW pair A+B RNA (23-mer) G 19 U 20 C 21 * G 28 U 29 C 30 cWW cWw cWW
51 IL_1T0E_002 1T0E 0.2444 0 Isolated non-canonical cWW pair C+A RNA (17-mer) G 14 U 15 C 16 * G 10||A U 11 C 12 cWW cWw cWW
52 IL_1T0D_004 1T0D 0.2420 0 D+C RNA (16-mer) G 24 U 25 C 26 * G 10 U 11 C 12 cWW cWw cWW
53 IL_2ZJR_019 2ZJR 0.3008 0 X LSU rRNA G 767 U 768 C 769 * G 754 C 755 C 756 cWW cWW cWW
54 IL_1YZ9_001 1YZ9 0.2476 0 Isolated non-canonical cWW pair D+C RNA (11-mer) A 15 C 16 U 17 * A 4 C 5 U 6 cWW ncBW cWW
55 IL_2O3V_001 2O3V 0.2765 0 Isolated non-canonical cWW pair B+A RNA (23-mer) G 42 U 43 C 44 * G 5 U 6 C 7 cWW cWw cWW
56 IL_2ZI0_001 2ZI0 0.2927 0 Isolated near cWW basepair C+D RNA (21-mer) U 9 U 10 A 11 * U 9 U 10 A 11 cWW cWW
57 IL_2Q1R_002 2Q1R 0.2889 0 A RNA (12-mer) C 1003||||2_755 G 1004||||2_755 A 1005||||2_755 * U 1008 A 1009 G 1010 cWW cWW cWW
58 IL_2FQN_001 2FQN 0.2731 0 B+A RNA (23-mer) G 42 U 43 C 44 * G 5 U 6 C 7 cWW cWw cWW
59 IL_1ZX7_004 1ZX7 0.2651 0 Isolated non-canonical cWW pair D+C RNA (14-mer) G 24 U 25 C 26 * G 10 U 11 C 12 cWW cWw cWW
60 IL_2O3X_004 2O3X 0.2810 0 Isolated non-canonical cWW pair A+B RNA (23-mer) G 19 U 20 C 21 * G 28 U 29 C 30 cWW cWw cWW
61 IL_2Q1R_001 2Q1R 0.2871 0 A RNA (12-mer) C 1003 G 1004 A 1005 * U 1008||||2_755 A 1009||||2_755 G 1010||||2_755 cWW cWW cWW
62 IL_2ZJR_107 2ZJR 0.3260 0 Isolated non-canonical cWW pair (H) Y 5S rRNA U 82 C 83 G 84 * C 97 C 98 G 99 cWW cBW cWW
63 IL_3BNL_001 3BNL 0.3338 0 B+A A site of bacterial ribosome G 18 U 19 C 20 * G 4 U 5 C 6 cWW cWw cWW
64 IL_2ZJR_079 2ZJR 0.3207 0 X LSU rRNA U 2211 U 2212 G 2213 * C 2068 U 2069 G 2070 ncWW cWw cWW
65 IL_2ZJR_090 2ZJR 0.3208 2 Isolated non-canonical cWW with bulges (H) X LSU rRNA C 2489 U 2490 C 2491 * G 2553 C 2554 G 2557 cWW ncWW cWW
66 IL_3BNL_002 3BNL 0.3345 1 B+A A site of bacterial ribosome G 15 A 17 G 18 * C 6 A 7 C 8 cWW cWw cWW
67 IL_3BNQ_007 3BNQ 0.3498 0 D+C A site of human mitochondrial ribosome, B chain G 17 U 18 C 19 * G 5 U 6 C 7 cWW cWw cWW
68 IL_3BNL_004 3BNL 0.3353 0 A+B A site of bacterial ribosome G 18 U 19 C 20 * G 4 U 5 C 6 cWW cWw cWW
69 IL_3D0U_006 3D0U 0.3716 0 Isolated non-canonical cWW pair A Lysine riboswitch C 134 A 135 C 136 * G 112 G 113 G 114 cWW cWW cWW
70 IL_3BNQ_012 3BNQ 0.3499 0 D+C A site of human mitochondrial ribosome, B chain G 3 U 4 C 5 * G 19 U 20 C 21 cWW cWw cWW
71 IL_3F1H_039 3F1H 0.4186 1 A LSU rRNA C 1121 G 1122 C 1123 * G 1031 A 1032 G 1034 cWW ncWW cWW
72 IL_3BNT_006 3BNT 0.3597 0 Isolated non-canonical cWW pair A A site of human mitochondrial ribosome G 18 U 19 C 20 * G 4||||4_665 U 5||||4_665 C 6||||4_665 cWW cWw cWW
73 IL_3F1H_014 3F1H 0.3917 0 A LSU rRNA C 564 C 565 U 566 * A 575 U 576 G 577 cWW cWW cWW
74 IL_3BNQ_006 3BNQ 0.3477 0 B+A A site of human mitochondrial ribosome, A chain G 5 U 6 C 7 * G 19 U 20 C 21 cWW cWw cWW
75 IL_1NLC_002 1NLC 0.2249 1 A+B HIV-1 DIS(MAL) genomic RNA C 15 A 16 C 17 * G 7||A G 9||A G 10 cWW cWW cWW
76 IL_2ZJR_029 2ZJR 0.3027 0 Isolated non-canonical cWW pair (H) X LSU rRNA U 917 A 918 U 919 * A 883 C 884 A 885 cWW cWW
77 IL_1MZP_001 1MZP 0.2084 0 Isolated non-canonical cWW pair B fragment of 23S rRNA C 50 U 51 U 52 * A 4 U 5 G 6 cWW cWw cWW
78 IL_1FJG_056 1FJG 0.1644 0 A SSU rRNA G 1405 U 1406 C 1407 * G 1494 U 1495 C 1496 cWW ncWw cWW
79 IL_1MWL_004 1MWL 0.1989 0 B+A RNA (22-mer) G 26 U 27 C 28 * G 18||A U 19 C 20 cWW ncWw cWW
80 IL_1FJG_058 1FJG 0.1651 0 Isolated non-canonical cWW pair (H) A SSU rRNA C 1412 A 1413 U 1414 * G 1486 G 1487 G 1488 cWW cWW cWW
81 IL_1FJG_044 1FJG 0.1244 0 A SSU rRNA G 1193 U 1194 C 1195 * G 1061 U 1062 C 1063 cWW cWw cWW
82 IL_157D_001 157D 0.0000 0 A+B RNA (12-mer) C 3 G 4 A 5 * U 20 A 21 G 22 cWW cWW cWW
83 IL_1FJG_006 1FJG 0.0845 0 Isolated non-canonical cWW pair (H) A SSU rRNA C 67 G 68 G 69 * C 99 A 101 G 102 cWW cWW cWW
84 IL_157D_002 157D 0.0845 0 B+A RNA (12-mer) C 15 G 16 A 17 * U 8 A 9 G 10 cWW cWW cWW
85 IL_1FJG_010 1FJG 0.0874 0 Isolated non-canonical cWW pair (H) A SSU rRNA C 186 C 187 C 188 * G 190|||K U 190|||L G 191 cWW cWW cWW
86 IL_1KFO_003 1KFO 0.1765 0 Isolated non-canonical cWW pair A RNA (19-mer) G 11 A 12 G 13 * C 6||||8_555 C 7||||8_555 U 8||||8_555 cWW cWW cWW
87 IL_1FJG_062 1FJG 0.1686 0 A SSU rRNA G 1464 C 1465 C 1466 * G 1435 U 1436 C 1437 cWW cWW cWW
88 IL_1ZEV_003 1ZEV 0.2552 0 B+A RNA (18-mer) C 10||A U 11||A G 12||A * C 7||A U 8||A G 9||A cWW ncwW cWW
89 IL_1S72_085 1S72 0.2345 2 Isolated non-canonical cWW with bulges (H) 0 LSU rRNA U 2545 U 2546 C 2547 * G 2609 U 2610 G 2613 cWW cWw cWW
90 IL_1L9A_007 1L9A 0.1800 0 Isolated cWH basepair B SRP RNA G 187 G 188 C 189 * G 210 U 211 C 212 cWW cWW
91 IL_1NLC_001 1NLC 0.2152 1 A+B HIV-1 DIS(MAL) genomic RNA G 7 G 9 G 10 * C 15 A 16 C 17 cWW cWW cWW
92 IL_1XJR_003 1XJR 0.2466 1 Isolated non-canonical cWW pair A s2m RNA C 16 A 17 C 18 * G 32 G 34 G 35 cWW cWW cWW
93 IL_1RPU_001 1RPU 0.2269 0 Isolated non-canonical cWW pair D+C RNA (21-mer) U 9||A C 10||A A 11||A * U 9||A C 10||A A 11||A cWW ncBW cWW
94 IL_1ZEV_005 1ZEV 0.2569 0 B+A RNA (18-mer) C 4||A U 5||A G 6||A * C 13||A U 14||A G 15||A cWW ncWw cWW
95 IL_1U9S_007 1U9S 0.2456 0 Isolated non-canonical cWW pair A RNase P class A C 191 A 192 C 193 * G 177 C 178 G 179 cWW cWW cWW
96 IL_1ZEV_001 1ZEV 0.2520 0 A+B RNA (18-mer) C 1||A U 2||A G 3||A * C 16||A U 17||A G 18||A ncWW cWW cWw cWW
97 IL_2O3Y_001 2O3Y 0.2837 0 Isolated non-canonical cWW pair B+A RNA (23-mer) G 42 U 43 C 44 * G 5 U 6 C 7 cWW cWw cWW
98 IL_1Z7F_001 1Z7F 0.2512 0 Isolated non-canonical cWW pair A RNA (16-mer) A 10||||6_765 A 11||||6_765 U 12||||6_765 * A 5 C 6 U 7 cWW cWW cWW
99 IL_1ZX7_002 1ZX7 0.2637 0 B+A RNA (14-mer) G 24 U 25 C 26 * G 10 U 11 C 12 cWW cWw cWW
100 IL_1ZEV_006 1ZEV 0.2573 0 A+B RNA (18-mer) C 16||A U 17||A G 18||A * C 1||A U 2||A G 3||A cWW ncWw cWW
101 IL_1MWL_001 1MWL 0.1920 0 A+B RNA (22-mer) G 4 U 5 C 6 * G 40 U 41 C 42 cWW ncWw cWW
102 IL_1S72_095 1S72 0.2352 1 Isolated non-canonical cWW with bulges (H) 0 LSU rRNA G 2855 A 2856 C 2857 * G 2900 C 2901 C 2903 cWW ncWW cWW
103 IL_1ZH5_001 1ZH5 0.2593 0 Isolated non-canonical cWW pair D+C RNA (9-mer) C 3 U 4 G 5 * C 3 U 4 G 5 cWW ncWw cWW
104 IL_1ZEV_004 1ZEV 0.2554 0 A+B RNA (18-mer) C 10||A U 11||A G 12||A * C 7||A U 8||A G 9||A cWW ncWw cWW
105 IL_2ZJR_013 2ZJR 0.2949 0 X LSU rRNA C 819 U 820 A 821 * U 685 C 686 G 687 cWW cWW cWW
106 IL_3F1H_024 3F1H 0.3986 1 A LSU rRNA G 931 A 933 G 934 * C 844 G 845 C 846 cWW cWW
107 IL_3F1H_043 3F1H 0.4718 1 A LSU rRNA C 1196 G 1197 U 1198 * A 1247 U 1249 G 1250 cWW cWS cWW
108 IL_3DIR_006 3DIR 0.3856 0 A Lysine riboswitch G 115 G 116 G 117 * C 137 A 138 C 139 cWW cWW cWW
109 IL_2ZKO_001 2ZKO 0.3305 0 Isolated non-canonical cWW pair C+D RNA (21-mer) U 9 U 10 A 11 * U 9 U 10 A 11 cWW cWW
110 IL_3E5C_001 3E5C 0.3909 3 Isolated non-canonical cWW pair A SAM-III riboswitch aptamer (SMK box) G 12 A 13 U 14 * A 27 G 28 C 32 cWW cWW cWW
111 IL_3GLP_001 3GLP 0.5626 0 A+B RNA (8-mer) C 2 U 3 G 4 * C 5||A U 6 G 7 cWW cWW
112 IL_3F1H_085 3F1H 0.5285 2 A LSU rRNA C 2297 A 2298 G 2299 * C 2317 G 2318 G 2321 cWW ntHS cWW
113 IL_3HHN_004 3HHN 0.6203 0 Isolated non-canonical cWW pair E Class I ligase ribozyme, self-ligation product A 102 A 103 C 104 * G 87 G 88 U 89 cWW cWW cWW
114 IL_3NJ7_001 3NJ7 0.6421 0 A+B RNA (10-mer) C 3 A 4 G 5 * C 6 A 7 G 8 cWW cWW
115 IL_3NJ7_005 3NJ7 0.7581 0 E+F RNA (10-mer) C 3 A 4 G 5 * C 6 A 7 G 8 cWW cWW
116 IL_3NJ7_004 3NJ7 0.6714 0 Isolated non-canonical cWW pair D+C RNA (10-mer) C 3 A 4 G 5 * C 6 A 7 G 8 cWW cWW
117 IL_3F1H_033 3F1H 0.4050 0 A LSU rRNA U 963 C 964 C 965 * G 952 A 953 G 954 cWW cWW cWW
118 IL_3NJ7_002 3NJ7 0.6455 0 B+A RNA (10-mer) C 3 A 4 G 5 * C 6 A 7 G 8 cWW cWW
119 IL_405D_002 405D 0.8108 0 A+B RNA (16-mer) A 10 A 11 U 12 * A 21 C 22 U 23 cWW cWW cWW
