IL_09705.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_4WF9_054	4WF9	0.6932	1	Other IL	X	LSU rRNA	C	1624	U	1625	A	1626	G	1627	*	C	1461	G	1462	A	1463	G	1465	cWW			cWW
2	IL_4ZNP_002	4ZNP	0.3704	0	Double sheared	A	ZMP/ZTP riboswitch	G	9	G	10	A	11	C	12	*	G	37	G	38	A	39	C	40	cWW	tSH	tHS	cWW
3	IL_4V8P_275	4V8P	0.3326	2	Double sheared	D1	LSU rRNA	G	3128	G	3129	A	3131	G	3133	*	C	2993	G	2994	A	2995	C	2996	cWW	tSH	tHS	cWW
4	IL_5J7L_256	5J7L	0.2498	0	Double sheared	DA	LSU rRNA	G	536	G	537	A	538	G	539	*	U	554	G	555	A	556	C	557	cWW	tSH	tHS	cWW
5	IL_4V88_396	4V88	0.3020	0	Double sheared	A6	SSU rRNA	G	196	A	197	A	198	G	199	*	C	186	G	187	A	188	C	189	cWW	tSH	tHS	cWW
6	IL_4V88_471	4V88	0.2180	0	Double sheared	A6	SSU rRNA	C	1729	A	1730	A	1731	A	1732	*	U	1669	G	1670	A	1671	G	1672	cWW	tSH	tHS	cWW
7	IL_4V5O_163	4V5O	0.2527	0	Double sheared	BA	SSU rRNA	U	1682	A	1683	A	1684	A	1685	*	U	1640	G	1641	A	1642	A	1643	cWW	tSH	tHS	cWW
8	IL_4V5O_086	4V5O	0.2778	1	Double sheared	BA	SSU rRNA	U	37	A	38	A	39	A	40	*	U	458	G	459	C	461	A	462	cWW	tSH	tHS	cWW
9	IL_5AOX_003	5AOX	0.2322	0	Double sheared	C	ALU JO CONSENSUS RNA	G	58	G	59	A	60	U	61	*	A	105	G	106	A	107	C	108	cWW	tSH	tHS	cWW
10	IL_4KZD_002	4KZD	0.1915	0	Double sheared	R	RNA (84-MER)	G	11	A	12	A	13	A	14	*	U	71	A	72	A	73	C	74	cWW	tSH	tHS	cWW
11	IL_4V8P_162	4V8P	0.2036	0	Double sheared	D1	LSU rRNA	G	125	A	126	A	127	G	128	*	C	138	A	139	A	140	C	141	cWW		tHS	cWW
12	IL_4V8P_164	4V8P	0.2466	0	Double sheared	D1	LSU rRNA	G	254	G	255	A	256	G	257	*	C	162	A	163	A	164	C	165	cWW	ntSH	tHS	cWW
13	IL_4LFB_060	4LFB	0.1941	0	Double sheared	A	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW	tSH	tHS	cWW
14	IL_4XWF_001	4XWF	0.2185	0	Double sheared	A	ZMP/ZTP riboswitch	G	36	G	37	A	38	G	39	*	U	7	G	8	A	9	C	10	cWW	tSH	tHS	cWW
15	IL_5BTP_004	5BTP	0.1990	0	Double sheared	B	ZMP/ZTP riboswitch	G	41	A	42	A	43	G	44	*	U	12	G	13	A	14	C	15	cWW	tSH	tHS	cWW
16	IL_3D0U_002	3D0U	0.0000	0	Double sheared	A	Lysine Riboswitch RNA	C	16	G	17	A	18	G	19	*	C	67	G	68	A	69	G	70	cWW	tSH	tHS	cWW
17	IL_1SA9_002	1SA9	0.1354	0	Double sheared	C+D	RNA (8-mer)	C	203	G	204	A	205	G	206	*	C	211	G	212	A	213	G	214	cWW	tSH	ntHS	cWW
18	IL_1SAQ_002	1SAQ	0.1695	0	Double sheared	A+B	RNA (8-mer)	C	103	G	104	A	105	G	106	*	C	111	G	112	A	113	G	114	cWW	tSH	tHS	cWW
19	IL_4IOA_083	4IOA	0.2119	0	Double sheared	X	LSU rRNA	C	2329	G	2330	A	2331	G	2332	*	C	2343	G	2344	A	2345	G	2346	cWW	tSH	tHS	cWW
20	IL_4Y4O_264	4Y4O	0.1828	0	Double sheared	2A	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW	tSH	tHS	cWW
21	IL_5J7L_333	5J7L	0.1885	0	Double sheared	DA	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW	tSH	tHS	cWW
22	IL_4WF9_087	4WF9	0.1679	0	Double sheared	X	LSU rRNA	C	2377	G	2378	A	2379	G	2380	*	C	2391	G	2392	A	2393	G	2394	cWW	tSH	tHS	cWW
23	IL_4IOA_058	4IOA	0.2811	0	Double sheared	X	LSU rRNA	U	1530	C	1531	A	1532	G	1533	*	C	1491	A	1492	A	1493	G	1494	cWW		tHS	cWW
24	IL_4WF9_016	4WF9	0.3243	0	Double sheared	X	LSU rRNA	U	597	G	598	A	599	U	600	*	A	581	G	582	A	583	G	584	cWW	tSH	tHS	cWW
25	IL_3DIL_002	3DIL	0.3817	0	Double sheared	A	RNA (174-MER)	C	70	G	71	A	72	G	73	*	C	19	G	20	A	21	G	22	cWW	tSH	tHS	cWW
26	IL_4V8P_290	4V8P	0.3042	0	Double sheared	D1	LSU rRNA	A	3300	G	3301	A	3302	G	3303	*	C	3316	G	3317	A	3318	U	3319	cWW	tSH	tHS	cWW
27	IL_4V9F_100	4V9F	0.3062	0	Double sheared	0	LSU rRNA	C	2873	G	2874	A	2875	G	2876	*	C	2881	G	2882	A	2883	G	2884	cWW	tSH	tHS	cWW
28	IL_4V88_468	4V88	0.2778	0	Double sheared	A6	SSU rRNA	A	1744	G	1745	A	1746	G	1747	*	C	1653	G	1654	A	1655	U	1656	cWW	tSH	tHS	cWW
29	IL_5J7L_062	5J7L	0.3746	0	Double sheared	AA	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW	tSH	tHS	cWW
30	IL_5J7L_327	5J7L	0.5953	0	Other IL	DA	LSU rRNA	A	2183	A	2184	U	2185	G	2186	*	C	2103	C	2104	U	2105	U	2106	ncWW	ntSH	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAG*CGAG	9
GGAG*UGAC	4
AGAG*CGAU	2
CUAG*CGAUG	1
GGAC*GGAC	1
GGAAAG*CGAC	1
GAAG*CGAC	1
CAAA*UGAG	1
UAAA*UGAA	1
UAAA*UGACA	1
GGAU*AGAC	1
GAAA*UAAC	1
GAAG*CAAC	1
GGAG*CAAC	1
GAAG*UGAC	1
UCAG*CAAG	1
UGAU*AGAG	1
AAUG*CCUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GA	18
AA*GA	4
AA*AA	2
UA*GAU	1
GAAA*GA	1
AA*GAC	1
GA*AA	1
CA*AA	1
AU*CU	1

Release history

Release	3.2
Date	2018-09-26
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_09705.1 Version IL_09705.1 of this group appears in releases 3.2 to 3.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_09705.1 Version IL_09705.1 of this group appears in releases 3.2 to 3.2

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Csv

Json