IL_13730.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_5XWP_001	5XWP	0.5219	2	Multiple bulged bases	C	RNA (59-MER)	A	5	C	6	*	G	22	U	25	cWW	cWW
2	IL_5WTK_001	5WTK	0.4367	2	Multiple bulged bases	B	RNA (58-MER)	A	3	C	4	*	G	20	U	23	cWW	cWW
3	IL_4V88_392	4V88	0.3981	2	Multiple bulged bases	A6	SSU rRNA	A	300	A	301	*	U	113	U	116	cWW	cWW
4	IL_5WLH_001	5WLH	0.3068	2	Multiple bulged bases	B	pre-crRNA	A	-23	G	-22	*	C	-7	U	-4	cWW	cWW
5	IL_5W1H_001	5W1H	0.3041	2	Multiple bulged bases	B	mature crRNA	A	-23	G	-22	*	C	-7	U	-4	cWW	cWW
6	IL_4YAZ_008	4YAZ	0.4195	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	G	51	G	52	*	C	64	C	67	cWW	cWW
7	IL_4V9F_021	4V9F	0.3247	2	Multiple bulged bases	0	LSU rRNA	C	726	G	727	*	C	699	G	702	cWW	cWW
8	IL_4LFB_005	4LFB	0.3614	2	Multiple bulged bases	A	SSU rRNA	C	103	G	104	*	C	63	G	66	cWW	cWW
9	IL_5J7L_005	5J7L	0.3151	2	Multiple bulged bases	AA	SSU rRNA	U	103	G	104	*	C	63	A	66	cWW	cWW
10	IL_6CZR_117	6CZR	0.3281	2	Multiple bulged bases	1a	SSU rRNA	C	97	G	98	*	C	64	G	67	cWW	cWW
11	IL_1NBS_009	1NBS	0.2416	2	Major groove intercalation	B	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
12	IL_1U9S_003	1U9S	0.2303	2	Major groove intercalation	A	RIBONUCLEASE P	U	116	G	117	*	C	224	A	227	cWW	cWW
13	IL_5J7L_026	5J7L	0.2704	5		AA	SSU rRNA	C	880	G	881	*	C	569	G	575	cWW	cWW
14	IL_4LFB_022	4LFB	0.2998	5		A	SSU rRNA	C	880	G	881	*	C	569	G	575	cWW	cWW
15	IL_6CZR_134	6CZR	0.3769	5		1a	SSU rRNA	C	858	G	859	*	C	553	G	559	cWW	cWW
16	IL_4WF9_071	4WF9	0.2981	2	Major groove intercalation	X	LSU rRNA	U	1868	G	1869	*	U	1925	A	1928	cWW	cWW
17	IL_3IWN_004	3IWN	0.1229	2	Multiple bulged bases	A	C-di-GMP riboswitch	G	46	G	47	*	U	76	C	79	cWW	cWW
18	IL_1FUF_002	1FUF	0.0846	2	Multiple bulged bases	B+A	RNA (14-mer)	G	23	G	24	*	U	5	C	8	cWW	cWW
19	IL_1FUF_003	1FUF	0.0811	2	Multiple bulged bases	A+B	RNA (14-mer)	G	9	G	10	*	U	19	C	22	cWW	cWW
20	IL_3MXH_004	3MXH	0.0000	2	Multiple bulged bases	R	c-di-GMP riboswitch	G	56	G	57	*	U	81	C	84	cWW	cWW
21	IL_5TBW_085	5TBW	0.1274	2	Major groove intercalation	1	LSU rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
22	IL_4V9F_067	4V9F	0.1717	2	Major groove intercalation	0	LSU rRNA	U	1897	G	1898	*	U	1939	A	1942	cWW	cWW
23	IL_5J7L_315	5J7L	0.1620	2	Major groove intercalation	DA	LSU rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
24	IL_4LFB_007	4LFB	0.1761	2	Multiple bulged bases	A	SSU rRNA	G	231	G	232	*	U	129	C	131	cWW	cWW
25	IL_6CZR_119	6CZR	0.2639	2	Multiple bulged bases	1a	SSU rRNA	G	227	G	228	*	U	123	C	126	cWW	cWW
26	IL_1R3E_001	1R3E	0.4404	3	Multiple bulged bases	D+E	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
27	IL_1R3E_002	1R3E	0.4692	3	Multiple bulged bases	D+E	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
28	IL_6JOO_001	6JOO	0.5883	3		B	Guide RNA	G	61	C	65	*	G	57	C	58	cWW	cWW
29	IL_5TBW_136	5TBW	0.7747	2	Multiple bulged bases	1	LSU rRNA	G	3353	G	3356	*	C	3349	C	3350	cWW	ncWW
30	IL_4V9F_088	4V9F	0.6914	2	Multiple bulged bases	0	LSU rRNA	G	2606	G	2609	*	C	2547	C	2548	cWW	cWW
31	IL_5TBW_109	5TBW	0.6785	2	Multiple bulged bases	1	LSU rRNA	A	2940	G	2943	*	C	2881	U	2882	cWW	cWW
32	IL_5TBW_119	5TBW	0.5455	2	Multiple bulged bases	1	LSU rRNA	A	3077	G	3080	*	C	3063	U	3064	cWW	cWW
33	IL_5J7L_349	5J7L	0.3920	2	Multiple bulged bases	DA	LSU rRNA	A	2711	G	2714	*	U	2695	U	2696	cWW	cWW
34	IL_4WF9_103	4WF9	0.3920	2	Multiple bulged bases	X	LSU rRNA	A	2738	G	2741	*	U	2722	U	2723	cWW	cWW
35	IL_1KXK_003	1KXK	0.4647	2	Multiple bulged bases	A	ai5g group II Self-splicing intron	C	42	G	45	*	U	28	G	29	cWW	cWW
36	IL_3IGI_013	3IGI	0.5631	2	Multiple bulged bases	A	Group IIC intron	U	375	G	378	*	U	365	A	366	cWW	cWW
37	IL_4IOA_092	4IOA	0.7110	2	Multiple bulged bases	X	LSU rRNA	C	2550	G	2553	*	C	2491	G	2492	cWW	cWW
38	IL_4Y4O_273	4Y4O	0.7278	2	Multiple bulged bases	2A	LSU rRNA	C	2571	G	2574	*	C	2512	G	2513	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UG*UAAA	4
CG*CGUAAAG	3
AC*GACU	2
AG*CAAU	2
CG*CGUG	2
GG*UAGC	2
GG*UUUC	2
GG*UGAC	2
CACG*CG	2
AA*UCGU	1
GG*CAGC	1
CG*CAUG	1
UG*CGAA	1
UG*CAAA	1
UG*UCAA	1
GUUCG*CC	1
CC*GUUCG	1
GUUUC*GC	1
GUUG*CC	1
GUCG*CC	1
AACG*CU	1
AUUG*CU	1
ACUG*UU	1
AUAG*UU	1
CACG*UG	1
UACG*UA	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	7
AC*	5
*AG	3
*GA	3
*GUAAA	3
*AC	2
*GU	2
*UU	2
UU*	2
*CG	1
*AU	1
*CA	1
UUC*	1
*UUC	1
UUU*	1
UC*	1
CU*	1
UA*	1

Release history

Release	3.18	3.19
Date	2019-05-03	2019-05-31
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_13730.3 Version IL_13730.3 of this group appears in releases 3.18 to 3.19 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_13730.3 Version IL_13730.3 of this group appears in releases 3.18 to 3.19

Download

Csv

Json