IL_13730.8

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_4Y4O_273	4Y4O	0.7278	2	Multiple bulged bases	2A	LSU rRNA	C	2512	G	2513	*	C	2571	G	2574	cWW	cWW
2	IL_4IOA_092	4IOA	0.7110	2	Multiple bulged bases	X	LSU rRNA	C	2491	G	2492	*	C	2550	G	2553	cWW	cWW
3	IL_3IGI_013	3IGI	0.5631	2	Multiple bulged bases	A	Group IIC intron	U	365	A	366	*	U	375	G	378	cWW	cWW
4	IL_1KXK_003	1KXK	0.4647	2	Multiple bulged bases	A	ai5g group II Self-splicing intron	U	28	G	29	*	C	42	G	45	cWW	cWW
5	IL_4WF9_103	4WF9	0.3920	2	Multiple bulged bases	X	LSU rRNA	U	2722	U	2723	*	A	2738	G	2741	cWW	cWW
6	IL_5J7L_349	5J7L	0.3920	2	Multiple bulged bases	DA	LSU rRNA	U	2695	U	2696	*	A	2711	G	2714	cWW	cWW
7	IL_5TBW_119	5TBW	0.5455	2	Multiple bulged bases	1	LSU rRNA	C	3063	U	3064	*	A	3077	G	3080	cWW	cWW
8	IL_5TBW_109	5TBW	0.6785	2	Multiple bulged bases	1	LSU rRNA	C	2881	U	2882	*	A	2940	G	2943	cWW	cWW
9	IL_4V9F_088	4V9F	0.6914	2	Multiple bulged bases	0	LSU rRNA	C	2547	C	2548	*	G	2606	G	2609	cWW	cWW
10	IL_5TBW_136	5TBW	0.7747	2	Multiple bulged bases	1	LSU rRNA	C	3349	C	3350	*	G	3353	G	3356	ncWW	cWW
11	IL_1U9S_008	1U9S	0.6088	1	Stack outside cWW	A	RIBONUCLEASE P	G	217	C	219	*	G	195	C	196	cWW	cWW
12	IL_6JXM_001	6JXM	0.6705	2	Multiple bulged bases	B	tRNA	G	53	U	56	*	A	34	C	35	cWW	cWW
13	IL_5T83_004	5T83	0.5373	2	Multiple bulged bases	A	Guanidine-I riboswitch	G	33	C	36	*	G	22	C	23	cWW	cWW
14	IL_6DLR_004	6DLR	0.5107	2	Multiple bulged bases	A	Guanidine-I riboswitch	G	36	C	39	*	G	22	C	23	cWW	cWW
15	IL_5WTK_001	5WTK	0.4367	2	Multiple bulged bases	B	RNA (58-MER)	G	20	U	23	*	A	3	C	4	cWW	cWW
16	IL_4V88_392	4V88	0.3981	2	Multiple bulged bases	A6	SSU rRNA	U	113	U	116	*	A	300	A	301	cWW	cWW
17	IL_5XWP_001	5XWP	0.5219	2	Multiple bulged bases	C	RNA (59-MER)	G	22	U	25	*	A	5	C	6	cWW	cWW
18	IL_5WLH_001	5WLH	0.3068	2	Multiple bulged bases	B	pre-crRNA	C	-7	U	-4	*	A	-23	G	-22	cWW	cWW
19	IL_5W1H_001	5W1H	0.3041	2	Multiple bulged bases	B	mature crRNA	C	-7	U	-4	*	A	-23	G	-22	cWW	cWW
20	IL_5LYS_007	5LYS	0.3205	2	Major groove intercalation	B	7SK RNA	A	39	G	42	*	C	67	U	68	cWW	cWW
21	IL_1XOK_001	1XOK	0.3041	2	Major groove intercalation	A	alfalfa mosaic virus RNA 3' UTR	A	864	G	867	*	C	846	U	847	cWW	cWW
22	IL_1XOK_002	1XOK	0.3862	2	Major groove intercalation	B+A	alfalfa mosaic virus RNA 3' UTR	G	877	G	880	*	C	868	C	869	cWW	cWW
23	IL_6IV9_001	6IV9	0.3447	2	Multiple bulged bases	B	crRNA (50-MER)	G	-9	U	-6	*	A	-29	C	-28	cWW	cWW
24	IL_5LYS_006	5LYS	0.3376	2	Stack outside cWW	B	7SK RNA	G	70	G	73	*	C	36	C	37	cWW	cWW
25	IL_387D_001	387D	0.4378	2	Multiple bulged bases	A	RNA Pseudoknot	G	15	A	18	*	U	1	C	2	cWW	cWW
26	IL_1R3E_002	1R3E	0.4692	3	Multiple bulged bases	E+D	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
27	IL_1R3E_001	1R3E	0.4404	3	Multiple bulged bases	E+D	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
28	IL_4KZD_006	4KZD	0.3300	2	Stack outside cWW	R	RNA (84-MER)	G	49	G	52	*	C	30	C	31	cWW	cWW
29	IL_1NTA_001	1NTA	0.3659	1	Stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	5	C	7	*	G	114	G	115	cWW	cWW
30	IL_1NBS_009	1NBS	0.2416	2	Major groove intercalation	B	RNase P class B	U	228	A	231	*	U	181	G	182	cWW	cWW
31	IL_1U9S_003	1U9S	0.2303	2	Major groove intercalation	A	RIBONUCLEASE P	C	224	A	227	*	U	116	G	117	cWW	cWW
32	IL_4WF9_071	4WF9	0.2981	2	Major groove intercalation	X	LSU rRNA	U	1925	A	1928	*	U	1868	G	1869	cWW	cWW
33	IL_4IOA_067	4IOA	0.2442	2	Multiple bulged bases	X	LSU rRNA	U	1881	A	1884	*	U	1833	G	1834	cWW	cWW
34	IL_6CZR_119	6CZR	0.2639	2	Multiple bulged bases	1a	SSU rRNA	U	123	C	126	*	G	227	G	228	cWW	cWW
35	IL_4LFB_007	4LFB	0.1761	2	Multiple bulged bases	A	SSU rRNA	U	129	C	131	*	G	231	G	232	cWW	cWW
36	IL_6JQ6_001	6JQ6	0.1516	1	Stack outside cWW	U	RNA (81-MER)	U	62\|\|\|\|11_555	C	64\|\|\|\|11_555	*	G	31\|\|\|\|11_555	G	32\|\|\|\|11_555	cWW	cWW
37	IL_6JQ6_004	6JQ6	0.1516	1	Stack outside cWW	U	RNA (81-MER)	U	62	C	64	*	G	31	G	32	cWW	cWW
38	IL_3IWN_004	3IWN	0.1229	2	Multiple bulged bases	A	C-di-GMP riboswitch	U	76	C	79	*	G	46	G	47	cWW	cWW
39	IL_3MXH_004	3MXH	0.0000	2	Multiple bulged bases	R	c-di-GMP riboswitch	U	81	C	84	*	G	56	G	57	cWW	cWW
40	IL_1FUF_002	1FUF	0.0846	2	Multiple bulged bases	A+B	RNA (14-mer)	U	5	C	8	*	G	23	G	24	cWW	cWW
41	IL_1FUF_003	1FUF	0.0811	2	Multiple bulged bases	B+A	RNA (14-mer)	U	19	C	22	*	G	9	G	10	cWW	cWW
42	IL_6JQ5_001	6JQ5	0.1666	1	Stack outside cWW	A	RNA (82-MER)	U	62	C	64	*	G	31	G	32	cWW	cWW
43	IL_4IOA_084	4IOA	0.1616	1	Major groove platform	X	LSU rRNA	U	2380	C	2382	*	G	2393	G	2394	cWW	cWW
44	IL_5TBW_085	5TBW	0.1274	2	Major groove intercalation	1	LSU rRNA	U	2241	A	2244	*	U	2200	G	2201	cWW	cWW
45	IL_4V9F_067	4V9F	0.1717	2	Major groove intercalation	0	LSU rRNA	U	1939	A	1942	*	U	1897	G	1898	cWW	cWW
46	IL_5J7L_315	5J7L	0.1620	2	Major groove intercalation	DA	LSU rRNA	U	1898	A	1901	*	U	1841	G	1842	cWW	cWW
47	IL_6CF2_002	6CF2	0.1857	2	Major groove intercalation	G	RNA (35-MER)	C	22	G	25	*	C	10	G	11	cWW	cWW
48	IL_6CZR_117	6CZR	0.3281	2	Multiple bulged bases	1a	SSU rRNA	C	64	G	67	*	C	97	G	98	cWW	cWW
49	IL_5J7L_005	5J7L	0.3151	2	Multiple bulged bases	AA	SSU rRNA	C	63	A	66	*	U	103	G	104	cWW	cWW
50	IL_4LFB_005	4LFB	0.3614	2	Multiple bulged bases	A	SSU rRNA	C	63	G	66	*	C	103	G	104	cWW	cWW
51	IL_4V9F_021	4V9F	0.3247	2	Multiple bulged bases	0	LSU rRNA	C	699	G	702	*	C	726	G	727	cWW	cWW
52	IL_1NTA_002	1NTA	0.3447	5	Major groove intercalation	A+B	RNA (22-mer) + RNA (18-mer)	C	7	G	13	*	C	113	G	114	cWW	cWW
53	IL_4YAZ_008	4YAZ	0.4195	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	C	64	C	67	*	G	51	G	52	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAA*UG	4
UGC*GG	3
CG*CACG	2
GACU*AC	2
CAAU*AG	2
UGAC*GG	2
UAGC*GG	2
UUUC*GG	2
CGUG*CG	2
UA*UACG	1
UG*CACG	1
UU*AUAG	1
UU*ACUG	1
CU*AUUG	1
CU*AACG	1
CC*GUCG	1
CC*GUUG	1
GGC*GC	1
GAUU*AC	1
GGUC*GC	1
GGAC*GC	1
UCGU*AA	1
AUUG*CU	1
AAUG*CU	1
GAUG*CC	1
GUCU*AC	1
GCUG*CC	1
GGAA*UC	1
GUUCG*CC	1
CC*GUUCG	1
GUUG*CC	1
CGC*GG	1
CAAA*UG	1
UGAA*UG	1
UAC*GG	1
UCAA*UG	1
CUGG*CG	1
CGAA*UG	1
CAUG*CG	1
CAUUUGG*CG	1
CAGC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	7
GA*	6
*AC	5
G*	5
AU*	4
UU*	4
GU*	3
AG*	3
*UU	2
AC*	2
*UA	1
*CU	1
*UC	1
CG*	1
UC*	1
CU*	1
UUC*	1
*UUC	1
A*	1
CA*	1
UG*	1
AUUUG*	1

Release history

Release	3.45	3.46	3.47
Date	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_13730.8 Version IL_13730.8 of this group appears in releases 3.45 to 3.47 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_13730.8 Version IL_13730.8 of this group appears in releases 3.45 to 3.47

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Csv

Json