Motif IL_15123.1 Version IL_15123.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-4 | 1-13 | 2-6 | 3-9 | 3-12 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_092 | 4A1B | 0.3459 | 3 | 1 | LSU rRNA | C | 2272 | C | 2273 | A | 2274 | A | 2275 | U | 2277 | G | 2278 | C | 2279 | C | 2280 | U | 2281 | G | 2283 | * | C | 2299 | G | 2300 | G | 2302 | ncSW | cWW | ncHW | tSs | ntHS | cWW | ||
| 2 | IL_4NVV_077 | 4NVV | 0.0000 | 3 | A | LSU rRNA | C | 1956 | G | 1957 | A | 1958 | A | 1959 | U | 1961 | U | 1962 | C | 1963 | C | 1964 | U | 1965 | G | 1967 | * | C | 1983 | C | 1984 | G | 1986 | cWW | ncSH | cHW | ncSH | cWW | |||
| 3 | IL_1VW3_061 | 1VW3 | 0.1357 | 3 | A | LSU rRNA | C | 1834 | G | 1835 | A | 1836 | A | 1837 | U | 1839 | U | 1840 | C | 1841 | C | 1842 | U | 1843 | G | 1845 | * | C | 1861 | C | 1862 | G | 1864 | cWW | cHW | ntSW | cWW | ||||
| 4 | IL_2QBG_077 | 2QBG | 0.4205 | 3 | B | LSU rRNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | U | 1939 | U | 1940 | C | 1941 | C | 1942 | U | 1943 | G | 1945 | * | C | 1961 | C | 1962 | G | 1964 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAUUCCUUG*CCUG | 2 |
| CCAAAUGCCUCG*CGCG | 1 |
| CGAAAUUCCUUG*CCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUUCCUU*CU | 2 |
| CAAAUGCCUC*GC | 1 |
| GAAAUUCCUU*CC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_15123.1 | Only in the parent motif |
|---|---|---|---|
| IL_89028.6 Compare | IL_2QBG_077, IL_4A1B_092 | IL_4NVV_077, IL_1VW3_061 | IL_3V2F_074 |
Children motifs
| Child motif | Common motif instances | Only in IL_15123.1 | Only in the child motif |
|---|---|---|---|
| IL_15123.2 Compare | IL_4NVV_077, IL_1VW3_061, IL_2QBG_077, IL_4A1B_092 | IL_4CUV_098 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cHW-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.28 | Max 0.52
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