#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10break 11 12 131-41-132-63-93-126-86-1210-11
1 IL_4A1B_0924A1B0.34593126S RRNAC2272C2273A2274A2275U2277G2278C2279C2280U2281G2283*C2299G2300G2302ncSWcWWncHWtSsntHScWW
2 IL_4NVV_0774NVV0.00003A23S Ribosomal RNAC1956G1957A1958A1959U1961U1962C1963C1964U1965G1967*C1983C1984G1986cWWncSHcHWncSHcWW
3 IL_1VW3_0611VW30.13573A21S ribosomal RNAC1834G1835A1836A1837U1839U1840C1841C1842U1843G1845*C1861C1862G1864cWWcHWntSWcWW
4 IL_2QBG_0772QBG0.42053B23S rRNAC1934G1935A1936A1937U1939U1940C1941C1942U1943G1945*C1961C1962G1964cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAUUCCUUG*CCUG2
CCAAAUGCCUCG*CGCG1
CGAAAUUCCUUG*CCCG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAAUUCCUU*CU2
CAAAUGCCUC*GC1
GAAAUUCCUU*CC1

Release history

Release1.14
Date2014-04-27
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_15123.1Only in the parent motif
IL_89028.6
Compare
IL_2QBG_077, IL_4A1B_092IL_4NVV_077, IL_1VW3_061IL_3V2F_074

Children motifs

Child motifCommon motif instancesOnly in IL_15123.1Only in the child motif
IL_15123.2
Compare
IL_4NVV_077, IL_1VW3_061, IL_2QBG_077, IL_4A1B_092IL_4CUV_098
Annotations
  • (4)
  • Basepair signature
    cWW-L-R-cHW-L-L-L-L-L-cWW
    Heat map statistics
    Min 0.14 | Avg 0.28 | Max 0.52
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