Motif IL_89028.6 Version IL_89028.6 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-4 | 1-13 | 2-6 | 3-8 | 3-9 | 3-12 | 4-13 | 6-7 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_077 | 2QBG | 0.4117 | 3 | B | 23S rRNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | U | 1939 | U | 1940 | C | 1941 | C | 1942 | U | 1943 | G | 1945 | * | C | 1961 | C | 1962 | G | 1964 | cWW | ntSH | ncSH | ntHW | ntWS | cWW | ||||||
| 2 | IL_3V2F_074 | 3V2F | 0.0000 | 3 | A | 23S Ribosomal RNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | U | 1939 | U | 1940 | C | 1941 | C | 1942 | U | 1943 | G | 1945 | * | C | 1961 | C | 1962 | G | 1964 | cWW | ncSH | cHW | ntSS | ntWS | cSH | cSH | cWW | ||||
| 3 | IL_4A1B_092 | 4A1B | 0.3370 | 3 | 1 | 26S RRNA | C | 2272 | C | 2273 | A | 2274 | A | 2275 | U | 2277 | G | 2278 | C | 2279 | C | 2280 | U | 2281 | G | 2283 | * | C | 2299 | G | 2300 | G | 2302 | cSW | cWW | ntHW | ncHW | tSS | ncSH | ncSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAUUCCUUG*CCUG | 2 |
| CCAAAUGCCUCG*CGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUUCCUU*CU | 2 |
| CAAAUGCCUC*GC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89028.6 | Only in the parent motif |
|---|---|---|---|
| IL_89028.5 Compare | IL_2QBG_077, IL_4A1B_092 | IL_3V2F_074 | IL_1S72_071 |
| IL_15674.1 Compare | IL_3V2F_074 | IL_2QBG_077, IL_4A1B_092 |
Children motifs
| Child motif | Common motif instances | Only in IL_89028.6 | Only in the child motif |
|---|---|---|---|
| IL_15123.1 Compare | IL_2QBG_077, IL_4A1B_092 | IL_3V2F_074 | IL_4NVV_077, IL_1VW3_061 |
- Annotations
- Basepair signature
- cWW-L-tSS-cHW-L-L-cSH-L-cWW
- Heat map statistics
- Min 0.34 | Avg 0.28 | Max 0.52
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