Motif IL_35043.1 Version IL_35043.1 of this group appears in releases 1.6 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 3-4 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1X8W_005 | 1X8W | 0.2631 | 1 | A | Tetrahymena ribozyme RNA | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 183 | A | 184 | A | 186 | A | 187 | G | 188 | C | 189 | cWW | cWH | cWW |
| 2 | IL_1GID_006 | 1GID | 0.0000 | 1 | A | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 183 | A | 184 | A | 186 | A | 187 | G | 188 | C | 189 | cWW | cWH | cWW |
| 3 | IL_1GID_013 | 1GID | 0.0698 | 1 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 183 | A | 184 | A | 186 | A | 187 | G | 188 | C | 189 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUA*UAAUAAGC | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*AAUAAG | 3 |
Release history
| Release | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_35043.1 | Only in the parent motif |
|---|---|---|---|
| IL_15768.1 Compare | IL_1GID_006, IL_1GID_013 | IL_1X8W_005 | IL_3V2F_025, IL_2ZI0_001 |
| IL_96182.1 Compare | IL_1X8W_005 | IL_1GID_006, IL_1GID_013 |
Children motifs
| Child motif | Common motif instances | Only in IL_35043.1 | Only in the child motif |
|---|---|---|---|
| IL_82444.2 Compare | IL_1GID_006, IL_1X8W_005, IL_1GID_013 | IL_420D_002, IL_420D_001, IL_4BPP_020, IL_2AW7_011, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_4NVV_027, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-cWH-R-R-R-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.26
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