#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-123-114-55-106-97-8
1 IL_3IGI_0113IGI0.574918x6 Sarcin-Ricin with inserted A; G-bulgeAGroup IIC intronC296U298A299G300U301A302C303*G316G317A318A319G320G321cWWncWWntHHtWHtHScWW
2 IL_4WF9_1004WF90.12200Sarcin-Ricin target in LSU H95; G-bulgeX LSU rRNAU2679U2680A2681G2682U2683A2684C2685*G2690G2691A2692C2693C2694G2695cWWtWHtHScWW
3 IL_8VTW_1028VTW0.09280Sarcin-Ricin target in LSU H95; G-bulge (H)1A LSU rRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW
4 IL_5J7L_3465J7L0.08010Sarcin-Ricin target in LSU H95; G-bulgeDA LSU rRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW
5 IL_7A0S_0947A0S0.00000Sarcin-Ricin target in LSU H95; G-bulgeX LSU rRNAC2631U2632A2633G2634U2635A2636C2637*G2642G2643A2644C2645C2646G2647cWWcSHtWHtHScWW
6 IL_4V9F_0194V9F0.146607x6 Sarcin-Ricin; G-bulge0 LSU rRNAC585C586A587G588U589A590A591*U567G568A569C570C571G572cWWcWBcSHtWHtHScWW
7 IL_1UN6_0041UN60.197907x6 Sarcin-Ricin with UU cWW pair; G-bulgeF5S RIBOSOMAL RNAU72U73A74G75U76A77C78*G98G99A100A101U102A103cWWcwWtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAGUAC*GGACCG3
CAUAGUAC*GGAAGG1
UUAGUAC*GGACCG1
CCAGUAA*UGACCG1
UUAGUAC*GGAAUA1
Non-Watson-Crick part of the motif
SequenceCounts
UAGUA*GACC4
AUAGUA*GAAG1
CAGUA*GACC1
UAGUA*GAAU1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Sarcin-Ricin target in LSU H95; G-bulge (3)
  • 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
  • 8x6 Sarcin-Ricin with inserted A; G-bulge (1)
  • 7x6 Sarcin-Ricin; G-bulge (1)
  • Sarcin-Ricin target in LSU H95; G-bulge (H) (1)
  • Basepair signature
    cWW-L-R-L-R-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.24 | Max 0.59
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