Motif IL_25230.1 Version IL_25230.1 of this group appears in releases 0.6 to 0.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14		15		16		17		18	1-18	2-17	3-16	4-15	6-13	7-12	8-11	9-10
1	IL_1FEU_002	1FEU	0.1430	0		E+F	19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
2	IL_3UXR_111	3UXR	0.0000	0		B	5S ribosomal RNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	C	79	*	G	98	G	99	A	100	G	101	A	102	G	103	U	104	A	105	G	106	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
3	IL_1FEU_001	1FEU	0.1263	0	Bacterial 5S Loop E	B+C	19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
4	IL_1DFU_001	1DFU	0.1599	0	Bacterial 5S Loop E	N+M	5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
5	IL_364D_003	364D	0.1611	0	Bacterial 5S Loop E	C+B	RNA (31-mer)	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	ntHW	cBW	ntWH	tWH	tHS	cWW
6	IL_2ZJR_106	2ZJR	0.2082	0		Y	5S rRNA	C	73	A	74	A	75	U	76	G	77	A	78	U	79	A	80	C	81	*	G	100	A	101	A	102	A	103	A	104	G	105	U	106	C	107	G	108	cWW	tSH	tHW	tHW	ncWB	tWH	tHS	cWW
7	IL_2QBG_005	2QBG	0.2261	0		A	5S rRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAUGGUAG*CGAGAGUAG	4
CGAUGGUAC*GGAGAGUAG	1
CGAGAGUAG*CGAUGGUAG	1
CAAUGAUAC*GAAAAGUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGGUA*GAGAGUA	5
GAGAGUA*GAUGGUA	1
AAUGAUA*AAAAGUC	1

Release history

Release	0.6
Date	2012-04-02
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_25230.1	Only in the parent motif
IL_96804.1 Compare	IL_1DFU_001, IL_2QBG_005, IL_1FEU_002, IL_1FEU_001	IL_364D_003, IL_3UXR_111, IL_2ZJR_106	IL_3PYO_102
IL_16614.1 Compare	IL_364D_003, IL_2ZJR_106	IL_1DFU_001, IL_2QBG_005, IL_3UXR_111, IL_1FEU_001, IL_1FEU_002

Children motifs

Child motif	Common motif instances	Only in IL_25230.1	Only in the child motif
IL_25230.2 Compare	IL_1DFU_001, IL_2QBG_005, IL_364D_003, IL_1FEU_001, IL_2ZJR_106	IL_3UXR_111, IL_1FEU_002	IL_3V2F_111

Annotations: Bacterial 5S Loop E (3)
Basepair signature: 18_cWW-tSH-tHW-bif--bif-tWH-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.15 | Max 0.25

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Coloring options: Nucleotide numbers

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