Motif IL_96804.1 Version IL_96804.1 of this group appears in releases 0.5 to 0.5
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-16 | 2-17 | 3-16 | 4-15 | 6-13 | 7-12 | 8-11 | 9-10 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_005 | 2QBG | 0.0961 | 0 | A | 5S rRNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW | ||
2 | IL_1FEU_002 | 1FEU | 0.0000 | 0 | E+F | 19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW | ||
3 | IL_1DFU_001 | 1DFU | 0.0937 | 0 | Bacterial 5S Loop E | N+M | 5S RRNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW | |
4 | IL_1FEU_001 | 1FEU | 0.1487 | 0 | Bacterial 5S Loop E | B+C | 19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | tSH | tHW | ncBW | cWB | tWH | tHS | cWW | |
5 | IL_3PYO_102 | 3PYO | 0.2098 | 0 | B | 5S ribosomal RNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | C | 79 | * | G | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | ntSH | tSH | ntHW | ncBW | ncWB | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAUGGUAG*CGAGAGUAG | 4 |
CGAUGGUAC*GGAGAGUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAUGGUA*GAGAGUA | 5 |
Release history
Release | 0.5 |
---|---|
Date | 2011-12-08 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_96804.1 | Only in the parent motif |
---|---|---|---|
IL_98756.1 Compare | IL_1DFU_001, IL_1FEU_002, IL_1FEU_001 | IL_3PYO_102, IL_2QBG_005 | IL_3F1H_112, IL_364D_003, IL_2ZJR_106 |
Children motifs
Child motif | Common motif instances | Only in IL_96804.1 | Only in the child motif |
---|---|---|---|
IL_25230.1 Compare | IL_1DFU_001, IL_2QBG_005, IL_1FEU_002, IL_1FEU_001 | IL_3PYO_102 | IL_364D_003, IL_3UXR_111, IL_2ZJR_106 |
- Annotations
-
- (3)
- Bacterial 5S Loop E (2)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.13 | Max 0.26
Coloring options: