#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 11 12 13 14 15 16 17 181-182-162-173-164-156-137-128-119-10
1 IL_2QBG_0052QBG0.09610A5S rRNAC71G72A73U74G75G76U77A78G79*C97G98A99G100A101G102U103A104G105cWWtSHtHWcBWcWBtWHtHScWW
2 IL_1FEU_0021FEU0.00000E+F19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNAC71G72A73U74G75G76U77A78G79*C97G98A99G100A101G102U103A104G105cWWtSHtHWcBWcWBtWHtHScWW
3 IL_1DFU_0011DFU0.09370Bacterial 5S Loop EN+M5S RRNAC71G72A73U74G75G76U77A78G79*C97G98A99G100A101G102U103A104G105cWWtSHtHWcBWcWBtWHtHScWW
4 IL_1FEU_0011FEU0.14870Bacterial 5S Loop EB+C19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNAC71G72A73U74G75G76U77A78G79*C97G98A99G100A101G102U103A104G105cWWtSHtHWncBWcWBtWHtHScWW
5 IL_3PYO_1023PYO0.20980B5S ribosomal RNAC71G72A73U74G75G76U77A78C79*G97G98A99G100A101G102U103A104G105cWWntSHtSHntHWncBWncWBtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAUGGUAG*CGAGAGUAG4
CGAUGGUAC*GGAGAGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAUGGUA*GAGAGUA5

Release history

Release0.5
Date2011-12-08
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_96804.1Only in the parent motif
IL_98756.1
Compare
IL_1DFU_001, IL_1FEU_002, IL_1FEU_001IL_3PYO_102, IL_2QBG_005IL_3F1H_112, IL_364D_003, IL_2ZJR_106

Children motifs

Child motifCommon motif instancesOnly in IL_96804.1Only in the child motif
IL_25230.1
Compare
IL_1DFU_001, IL_2QBG_005, IL_1FEU_002, IL_1FEU_001IL_3PYO_102IL_364D_003, IL_3UXR_111, IL_2ZJR_106
Annotations
  • (3)
  • Bacterial 5S Loop E (2)
  • Basepair signature
    Heat map statistics
    Min 0.09 | Avg 0.13 | Max 0.26
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