Motif IL_26307.1 Version IL_26307.1 of this group appears in releases 3.93 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NBS_007 | 1NBS | 0.2277 | 0 | 7x6 Sarcin-Ricin; G-bulge | B | RNase P class B | U | 165 | G | 166 | A | 167 | G | 168 | U | 169 | A | 170 | U | 171 | * | A | 138 | A | 139 | A | 140 | A | 141 | A | 142 | A | 143 | cWW | ntSH | tHH | cSH | ntWH | tHS | cWW |
| 2 | IL_4V9F_106 | 4V9F | 0.2062 | 0 | 7x6 Sarcin-Ricin; G-bulge | 9 | 5S rRNA | G | 75 | G | 76 | A | 77 | G | 78 | U | 79 | A | 80 | C | 81 | * | G | 101 | G | 102 | A | 103 | A | 104 | A | 105 | U | 106 | ncWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 3 | IL_4V9F_092 | 4V9F | 0.2144 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | 0 | LSU rRNA | A | 2689 | U | 2690 | A | 2691 | G | 2692 | U | 2693 | A | 2694 | C | 2695 | * | G | 2700 | G | 2701 | A | 2702 | A | 2703 | C | 2704 | U | 2705 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 4 | IL_8P9A_289 | 8P9A | 0.1820 | 0 | 7x6 Sarcin-Ricin; G-bulge (H) | AR | LSU rRNA | G | 1444 | U | 1445 | A | 1446 | G | 1447 | U | 1448 | A | 1449 | G | 1450 | * | C | 2354 | G | 2355 | A | 2356 | A | 2357 | A | 2358 | C | 2359 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 5 | IL_9DFE_007 | 9DFE | 0.1055 | 0 | 1A | LSU rRNA | U | 239 | G | 240 | A | 241 | G | 242 | U | 243 | A | 244 | G | 245 | * | C | 253 | G | 254 | A | 255 | A | 256 | A | 257 | G | 258 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 6 | IL_5J7L_251 | 5J7L | 0.0000 | 0 | 7x6 Sarcin-Ricin; G-bulge | DA | LSU rRNA | C | 239 | C | 240 | A | 241 | G | 242 | U | 243 | A | 244 | G | 245 | * | C | 253 | G | 254 | A | 255 | A | 256 | C | 257 | G | 258 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 7 | IL_4V9F_007 | 4V9F | 0.1169 | 0 | 7x6 Sarcin-Ricin; G-bulge | 0 | LSU rRNA | U | 210 | U | 211 | A | 212 | G | 213 | U | 214 | A | 215 | A | 216 | * | U | 224 | G | 225 | A | 226 | A | 227 | C | 228 | G | 229 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 8 | IL_4V9F_049 | 4V9F | 0.1857 | 0 | 7x6 Sarcin-Ricin; G-bulge | 0 | LSU rRNA | A | 1367 | U | 1368 | A | 1369 | G | 1370 | U | 1371 | A | 1372 | G | 1373 | * | U | 2052 | G | 2053 | A | 2054 | A | 2055 | C | 2056 | U | 2057 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAGUAU*AAAAAA | 1 |
| GGAGUAC*GGAAAU | 1 |
| AUAGUAC*GGAACU | 1 |
| GUAGUAG*CGAAAC | 1 |
| UGAGUAG*CGAAAG | 1 |
| CCAGUAG*CGAACG | 1 |
| UUAGUAA*UGAACG | 1 |
| AUAGUAG*UGAACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUA*GAAC | 3 |
| GAGUA*GAAA | 2 |
| GAGUA*AAAA | 1 |
| UAGUA*GAAA | 1 |
| CAGUA*GAAC | 1 |
- Annotations
-
- 7x6 Sarcin-Ricin; G-bulge (5)
- Sarcin-Ricin target in LSU H95; G-bulge (1)
- 7x6 Sarcin-Ricin; G-bulge (H) (1)
- (1)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.17 | Max 0.25
Coloring options: