IL_65542.1

Sequence	Counts
UCAGGU*AAGCAG	3
UGA*UACCA	1
UCGUAG*UCAAGA	1
UCAGAG*CAGCAG	1
AAGCAG*UCAGGU	1
CCAGGU*GAGCAG	1
CGUAGU*AUCAAG	1
CAGAAC*GGGAAG	1

Sequence	Counts
CAGG*AGCA	4
G*ACC	1
CGUA*CAAG	1
CAGA*AGCA	1
AGCA*CAGG	1
GUAG*UCAA	1
AGAA*GGAA	1

Release	1.17
Date	2014-09-04
Status	New id, 2 parents

Parent motif	Common motif instances	Only in IL_65542.1	Only in the parent motif
IL_47444.3 Compare	IL_2PXV_002, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_2XXA_015, IL_1MFQ_007	IL_4A1B_017, IL_1VX2_032, IL_4CUX_035, IL_1VWW_084	IL_3U5H_127, IL_4FAW_007, IL_1D4R_002
IL_21761.1 Compare	IL_4A1B_017, IL_4CUX_035	IL_2PXV_002, IL_1VWW_084, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1VX2_032, IL_2XXA_015, IL_1MFQ_007	IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4BPP_078, IL_3U5H_027, IL_1FJG_053, IL_4CUV_132

Child motif	Common motif instances	Only in IL_65542.1	Only in the child motif
IL_98284.1 Compare	IL_2PXV_002, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_2XXA_015, IL_1MFQ_007	IL_4A1B_017, IL_1VX2_032, IL_4CUX_035, IL_1VWW_084	IL_1D4R_002, IL_4W21_041, IL_4FAW_007
IL_26321.2 Compare	IL_4A1B_017, IL_4CUX_035	IL_2PXV_002, IL_1VWW_084, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1VX2_032, IL_2XXA_015, IL_1MFQ_007	IL_4QK9_001, IL_4QK8_001, IL_4QLM_002, IL_3B5F_001

Annotations: (8)
tSH-tHW-tHS-cWW (2)
Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
Heat map statistics: Min 0.14 | Avg 0.42 | Max 1.01

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view

reading 1359 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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1359 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 82 ms

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Coloring options: Nucleotide numbers

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-10	2-11	3-9	3-10	4-9	5-8	6-7	9-10
1	IL_1VWW_084	1VWW	0.7363	-4		5	28S ribosomal RNA	U	2032	A	2033	G	2034	C	2035	C	2036	C	2037	*	G	1945	G	1946	G	1948	U	1949	U	1950	G	1951	cWW			ncWw				cWW
2	IL_1VX2_032	1VX2	0.3386	0		2	18S ribosomal RNA	U	1025	C	1026	A	1027	A	1028	G	1029	A	1030	*	U	675	C	676	G	677	U	678	A	679	G	680	ncWW		ntSH						ncSH
3	IL_2XXA_015	2XXA	0.2089	0		G	SSRP RNA	U	40	C	41	A	42	G	43	A	44	G	45	*	C	54	A	55	G	56	C	57	A	58	G	59	cWW		ntSH		ntHW	tHS	cWw	cWW
4	IL_1DUH_004	1DUH	0.0000	0		A	4.5S RNA DOMAIN IV	U	45\|\|\|\|4_555	C	46\|\|\|\|4_555	A	47\|\|\|\|4_555	G	48\|\|\|\|4_555	G	49\|\|\|\|4_555	U	50\|\|\|\|4_555	*	A	59	A	60	G	61	C	62	A	63	G	64	cWW		tSH		tHW	tHS	cWW	cWW
5	IL_1DUH_002	1DUH	0.0000	0		A	4.5S RNA DOMAIN IV	U	45	C	46	A	47	G	48	G	49	U	50	*	A	59\|\|\|\|4_555	A	60\|\|\|\|4_555	G	61\|\|\|\|4_555	C	62\|\|\|\|4_555	A	63\|\|\|\|4_555	G	64\|\|\|\|4_555	cWW		tSH		tHW	tHS	cWW	cWW
6	IL_2PXV_002	2PXV	0.1394	0		B	4.5 S RNA	U	146	C	147	A	148	G	149	G	150	U	151	*	A	160	A	161	G	162	C	163	A	164	G	165	cWW	ntWH	tSH		tHW	tHS	cWW	cWW
7	IL_1LNT_002	1LNT	0.1799	0	tSH-tHW-tHS-cWW	A+B	RNA (12-mer)	U	4	C	5	A	6	G	7	G	8	U	9	*	A	16	A	17	G	18	C	19	A	20	G	21	cWW		tSH		tHW	tHS	cWW	cWW
8	IL_1MFQ_007	1MFQ	0.2033	0	tSH-tHW-tHS-cWW	A	SRP RNA	C	190	C	191	A	192	G	193	G	194	U	195	*	G	204	A	205	G	206	C	207	A	208	G	209	cWW	tWH	ntSH		tHW	tHS	cWW	cWW
9	IL_4CUX_035	4CUX	0.5263	0		2	18S RRNA	C	627	G	628	U	629	A	630	G	631	U	632	*	A	967	U	968	C	969	A	970	A	971	G	972			ntSH					cWW
10	IL_4A1B_017	4A1B	0.5856	0		1	26S RRNA	C	516	A	517	G	518	A	519	A	520	C	521	*	G	457	G	458	G	459	A	460	A	461	G	462	cWW						ntHS	cWW

Motif IL_65542.1 Version IL_65542.1 of this group appears in releases 1.17 to 1.17

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3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_65542.1 Version IL_65542.1 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_65542.1 Version IL_65542.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json