Motif IL_29610.1 Version IL_29610.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OZB_001 | 2OZB | 0.0000 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 2 | IL_2XZM_066 | 2XZM | 0.3573 | 2 | A | 18S RRNA | U | 1244 | A | 1247 | * | U | 1408 | G | 1409 | ncWW | cWW | |
| 3 | IL_1KXK_001 | 1KXK | 0.5711 | 2 | A | ai5g group II Self-splicing intron | U | 8 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
| 4 | IL_3U5H_046 | 3U5H | 0.4859 | 2 | 5 | 25S rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW | |
| 5 | IL_4A1B_032 | 4A1B | 0.6599 | 1 | 1 | 26S RRNA | G | 800 | U | 802 | * | A | 779 | C | 780 | cWW | cWW | |
| 6 | IL_2QBG_032 | 2QBG | 0.8883 | 1 | B | 23S rRNA | U | 913 | C | 915 | * | G | 862 | A | 863 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CG | 1 |
| UGCA*UG | 1 |
| UAUC*GG | 1 |
| UCCG*UG | 1 |
| GUU*AC | 1 |
| UGC*GA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 1 |
| GC* | 1 |
| AU* | 1 |
| CC* | 1 |
| U* | 1 |
| G* | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_29610.1 | Only in the parent motif |
|---|---|---|---|
| IL_28693.1 Compare | IL_1KXK_001, IL_2QBG_032 | IL_2OZB_001, IL_2XZM_066, IL_4A1B_032, IL_3U5H_046 | IL_3O58_104, IL_2IPY_001, IL_2IPY_004, IL_3IWN_001, IL_2ZJR_024 |
| IL_19830.1 Compare | IL_2XZM_066 | IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3U5H_046, IL_2QBG_032 | |
| IL_97493.1 Compare | IL_2OZB_001 | IL_2XZM_066, IL_1KXK_001, IL_4A1B_032, IL_3U5H_046, IL_2QBG_032 | IL_2QBG_037, IL_2QBG_086, IL_2NZ4_004, IL_2XZM_028, IL_1FJG_020, IL_3O58_065, IL_3O30_066, IL_2ZJR_033, IL_2AW7_027, IL_3PYO_057 |
Children motifs
| Child motif | Common motif instances | Only in IL_29610.1 | Only in the child motif |
|---|---|---|---|
| IL_89088.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2OZB_001, IL_2XZM_066, IL_3U5H_046 | IL_1KXK_003, IL_1S72_045, IL_3U5H_063 |
| IL_32390.2 Compare | IL_2OZB_001, IL_2XZM_066, IL_3U5H_046 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2QBG_086, IL_2NZ4_007, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_1FJG_005, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_4A1B_063, IL_2AW7_029, IL_3U5H_019, IL_3U5H_137, IL_1S72_099, IL_2AW7_005, IL_3V2F_059, IL_3V2F_107 |
- Annotations
-
- Single bulged A (1)
- Basepair signature
- 04_cWW-cWW
- Heat map statistics
- Min 0.35 | Avg 0.47 | Max 0.89
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