Motif IL_97493.1 Version IL_97493.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2NZ4_004 | 2NZ4 | 0.0453 | 1 | Single bulged A | F+Q | C | 5 | G | 7 | * | C | 52 | G | 53 | cWW | cWW |
| 2 | IL_2AW7_027 | 2AW7 | 0.0000 | 6 | A | C | 504 | C | 511 | * | G | 540 | G | 541 | cWW | cWW | |
| 3 | IL_3PYO_057 | 3PYO | 0.2743 | 1 | A | U | 1489 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW | |
| 4 | IL_2QBG_086 | 2QBG | 0.2975 | 1 | B | U | 2202 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW | |
| 5 | IL_2XZM_028 | 2XZM | 0.3712 | 6 | A | A | 543 | G | 550 | * | C | 581 | U | 582 | cWW | cWW | |
| 6 | IL_2ZJR_033 | 2ZJR | 0.4011 | 6 | SSU/LSU pseudoknot (H) | X | U | 1015 | A | 1022 | * | U | 1161 | A | 1162 | cWW | cWW |
| 7 | IL_2OZB_001 | 2OZB | 0.7000 | 1 | Single bulged A | C | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 8 | IL_3O58_065 | 3O58 | 0.5908 | 6 | 1 | U | 1173 | A | 1180 | * | U | 1325 | A | 1326 | cWW | cWW | |
| 9 | IL_2QBG_037 | 2QBG | 0.5212 | 6 | B | U | 1004 | G | 1011 | * | C | 1150 | A | 1151 | cWW | cWW | |
| 10 | IL_1FJG_020 | 1FJG | 0.5255 | 6 | SSU/LSU pseudoknot (H) | A | C | 504 | C | 511 | * | G | 540 | G | 541 | cWW | cWW |
| 11 | IL_3O30_066 | 3O30 | 0.7192 | 2 | 1 | U | 1272 | A | 1275 | * | U | 1437 | G | 1438 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CG | 2 |
| CAG*CG | 1 |
| CGGCUAAC*GG | 1 |
| UUG*UG | 1 |
| AGGGCAAG*CU | 1 |
| UCCCUAAA*UA | 1 |
| UGCCGGAA*UA | 1 |
| UCCCAAAG*CA | 1 |
| CGGCCAAC*GG | 1 |
| UGCA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 3 |
| GGCUAA* | 1 |
| U* | 1 |
| GGGCAA* | 1 |
| CCCUAA* | 1 |
| GCCGGA* | 1 |
| CCCAAA* | 1 |
| GGCCAA* | 1 |
| GC* | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_97493.1 | Only in the parent motif |
|---|---|---|---|
| IL_06484.1 Compare | IL_1FJG_020, IL_2ZJR_033 | IL_2QBG_037, IL_2QBG_086, IL_2NZ4_004, IL_2OZB_001, IL_2XZM_028, IL_3O58_065, IL_3O30_066, IL_2AW7_027, IL_3PYO_057 | IL_1S72_039, IL_3F1H_036 |
| IL_89723.1 Compare | IL_2OZB_001, IL_2NZ4_004 | IL_2QBG_037, IL_2QBG_086, IL_2XZM_028, IL_2ZJR_033, IL_3O58_065, IL_3O30_066, IL_1FJG_020, IL_2AW7_027, IL_3PYO_057 | IL_3F1H_087, IL_1S72_096, IL_1FJG_005, IL_1FJG_007, IL_1MJI_001, IL_1MJI_003, IL_3G78_004, IL_1S72_064, IL_1S72_067, IL_3F1H_032, IL_1S72_042, IL_1U9S_006, IL_3D0U_005, IL_1U9S_003, IL_1S72_022, IL_3F1H_059, IL_2NZ4_007, IL_2IPY_001, IL_2IPY_004, IL_1KXK_003, IL_2QUX_004, IL_1FJG_016, IL_2QUX_006, IL_2QUX_001, IL_2QUX_002, IL_2QUX_003, IL_3B31_001, IL_3DIR_005, IL_1FUF_002, IL_1FUF_003, IL_2QUX_005, IL_1S72_010, IL_3MUR_003, IL_3MUR_004 |
Children motifs
- Annotations
-
- (7)
- SSU/LSU pseudoknot (H) (2)
- Single bulged A (2)
- Basepair signature
- Heat map statistics
- Min 0.05 | Avg 0.45 | Max 0.86
Coloring options: