Motif IL_28693.1 Version IL_28693.1 of this group appears in releases 0.5 to 0.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3	break		4		5	1-5	3-4
1	IL_3IWN_001	3IWN	0.8009	0	Minor groove platform	A	G	89	A	90	U	91	*	A	2	C	3	ncWW	cWW
2	IL_2IPY_004	2IPY	0.5322	0		D	U	5	U	6	G	7	*	C	25	G	26	cWW	cWW
3	IL_2ZJR_024	2ZJR	0.7084	0		X	G	938	C	939	G	940	*	C	863	C	864	cWW	cWW
4	IL_1KXK_001	1KXK	0.0000	1		A	U	8	U	10	C	11	*	G	61	G	62	cWW	cWW
5	IL_2QBG_032	2QBG	0.5865	0		B	U	913	G	914	C	915	*	G	862	A	863	cWW	cWW
6	IL_2IPY_001	2IPY	0.6414	0		C	U	5	U	6	G	7	*	C	25	G	26	cWW	cWW
7	IL_3O58_104	3O58	0.7265	0		1	C	2204	U	2205	G	2206	*	C	2237	G	2238	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUG*CG	2
GAU*AC	1
GCG*CC	1
UAUC*GG	1
UGC*GA	1
CUG*CG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*	3
A*	1
C*	1
AU*	1
G*	1

Release history

Release	0.5
Date	2011-12-08
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_28693.1	Only in the parent motif
IL_89723.1 Compare	IL_2IPY_001, IL_2IPY_004	IL_3O58_104, IL_1KXK_001, IL_2QBG_032, IL_2ZJR_024, IL_3IWN_001	IL_3F1H_087, IL_1S72_096, IL_2OZB_001, IL_1FJG_005, IL_1FJG_007, IL_1MJI_001, IL_1MJI_003, IL_3G78_004, IL_1S72_064, IL_1S72_067, IL_3F1H_032, IL_1S72_042, IL_1U9S_006, IL_3D0U_005, IL_1U9S_003, IL_1S72_022, IL_3F1H_059, IL_2NZ4_007, IL_2NZ4_004, IL_1KXK_003, IL_2QUX_004, IL_1FJG_016, IL_2QUX_006, IL_2QUX_001, IL_2QUX_002, IL_2QUX_003, IL_3B31_001, IL_3DIR_005, IL_1FUF_002, IL_1FUF_003, IL_2QUX_005, IL_1S72_010, IL_3MUR_003, IL_3MUR_004
IL_96481.1 Compare	IL_1KXK_001	IL_2IPY_001, IL_2QBG_032, IL_2ZJR_024, IL_3O58_104, IL_3IWN_001, IL_2IPY_004	IL_2PN4_008, IL_1GID_009, IL_1I9X_002, IL_2PN4_003, IL_2ZJR_031, IL_1FJG_001, IL_1FJG_040, IL_1S72_088, IL_2C50_002, IL_1GID_005, IL_2C50_001, IL_3D2V_004, IL_1S72_045, IL_3D2V_001, IL_2PLY_002, IL_2PLY_001, IL_3MEI_001, IL_2GIS_001, IL_2VPL_002, IL_2BU1_001, IL_1DQH_001, IL_1S03_006, IL_1FJG_036, IL_1JZV_002, IL_1JZV_005, IL_2C4Z_002, IL_1ET4_008, IL_1S72_077, IL_1ET4_004, IL_3F1H_098, IL_1ET4_002, IL_1GID_002, IL_3F1H_034, IL_1S03_002, IL_1S72_104, IL_2ZJR_093, IL_1F7Y_002, IL_2ZY6_002
IL_40289.2 Compare	IL_2ZJR_024	IL_2IPY_001, IL_2QBG_032, IL_2IPY_004, IL_1KXK_001, IL_3O58_104, IL_3IWN_001	IL_2ZJR_056, IL_2IPY_002, IL_1S72_014, IL_2ZJR_011, IL_2ZJR_016, IL_1DUQ_002, IL_1DUQ_004, IL_1FJG_002, IL_1DUQ_006, IL_1DUQ_008, IL_1GID_012, IL_3F1H_105, IL_3F1H_019, IL_1S72_002, IL_1S72_027, IL_1S72_026, IL_1U9S_001, IL_2ZJR_068, IL_2ZJR_065, IL_1S72_099, IL_2OIU_003, IL_2OIU_001, IL_3F1H_073, IL_1CSL_002, IL_2ZJR_002, IL_1FJG_035, IL_2PJP_001, IL_2IPY_005, IL_1S72_070, IL_3F1H_037, IL_3F1H_066, IL_3F1H_002, IL_3OWZ_005, IL_3F1H_046, IL_2ZJR_072, IL_3HHN_003, IL_3HHN_001

Children motifs

Child motif	Common motif instances	Only in IL_28693.1	Only in the child motif
IL_29610.1 Compare	IL_1KXK_001, IL_2QBG_032	IL_3O58_104, IL_2IPY_001, IL_2IPY_004, IL_3IWN_001, IL_2ZJR_024	IL_2OZB_001, IL_2XZM_066, IL_4A1B_032, IL_3U5H_046
IL_44540.1 Compare	IL_3IWN_001	IL_2IPY_001, IL_2QBG_032, IL_2IPY_004, IL_1KXK_001, IL_2ZJR_024, IL_3O58_104	IL_3UXR_028, IL_3UXR_003, IL_2QBG_081, IL_2AW7_050, IL_1FJG_004, IL_2QBG_008, IL_2AW7_004, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_3RW6_005, IL_2GDI_003, IL_3U5F_029, IL_1S72_075, IL_3U5F_062, IL_1Y0Q_003, IL_2XZM_070, IL_1U6B_007, IL_2ZJR_027, IL_1X8W_004, IL_2ZJR_003, IL_2AW7_045, IL_3U5H_041, IL_2QWY_009, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_4A1B_020, IL_1FJG_052, IL_1FJG_051, IL_3UXR_078, IL_3RW6_001, IL_2XZM_061, IL_2XZM_005, IL_1S72_033, IL_1FJG_038, IL_3U5F_071, IL_1S72_035, IL_3U5F_005, IL_3UXR_070, IL_4A1B_096, IL_3U5H_099, IL_2ZJR_077
IL_32390.1 Compare	IL_2ZJR_024	IL_2IPY_001, IL_2QBG_032, IL_2IPY_004, IL_1KXK_001, IL_3O58_104, IL_3IWN_001	IL_2QBG_086, IL_2NZ4_007, IL_1S72_045, IL_2XZM_033, IL_3G78_015, IL_1S72_042, IL_3U5H_063, IL_4A1B_063, IL_3UXR_107, IL_3U5H_137, IL_3U5F_033, IL_1FJG_022, IL_2NZ4_004, IL_1S72_022, IL_1KXK_003, IL_1FJG_005, IL_2AW7_029, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060

Annotations: (6)
Minor groove platform (1)
Basepair signature
Heat map statistics: Min 0.18 | Avg 0.58 | Max 0.95

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Coloring options: Nucleotide numbers

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