Motif IL_30381.1 Version IL_30381.1 of this group appears in releases 1.5 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_046 | 2QBG | 0.0000 | 1 | B | 23S rRNA | G | 1202 | U | 1203 | A | 1204 | G | 1206 | * | U | 1240 | A | 1241 | U | 1242 | C | 1243 | cWW | cwW | ntWW | cWW | |
| 2 | IL_255D_001 | 255D | 0.8984 | 0 | Tandem non-canonical cWW pairs | A | RNA (12-mer) | U | 5 | U | 6 | C | 7 | G | 8 | * | U | 5||||2_656 | U | 6||||2_656 | C | 7||||2_656 | G | 8||||2_656 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAG*UAUC | 1 |
| UUCG*UUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 1 |
| UC*UC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_30381.1 | Only in the parent motif |
|---|---|---|---|
| IL_09901.1 Compare | IL_2QBG_046 | IL_255D_001 | IL_3BNQ_005 |
| IL_04550.1 Compare | IL_255D_001 | IL_2QBG_046 |
Children motifs
| Child motif | Common motif instances | Only in IL_30381.1 | Only in the child motif |
|---|---|---|---|
| IL_70069.1 Compare | IL_255D_001 | IL_2QBG_046 | |
| IL_32902.1 Compare | IL_2QBG_046 | IL_255D_001 | IL_1VW3_042, IL_1CSL_001, IL_2QBG_055, IL_1DUQ_001, IL_1VX6_076, IL_4CUX_062, IL_3J7A_044 |
- Annotations
-
- Tandem non-canonical cWW pairs (1)
- (1)
- Basepair signature
- cWW-cWW-L-R-cWW
- Heat map statistics
- Min 0.90 | Avg 0.45 | Max 0.90
Coloring options: