Motif IL_31555.7 Version IL_31555.7 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-7	3-6	4-5
1	IL_1VX6_125	1VX6	0.5032	1		A	28S ribosomal RNA	U	3440	A	3441	A	3443	G	3444	*	C	3469	G	3470	A	3471	A	3472	G	3473	cWW			cWW
2	IL_4A1B_120	4A1B	0.3655	2		1	26S RRNA	U	3043	A	3044	A	3046	A	3048	*	U	3073	G	3074	A	3075	A	3076	G	3077	cWW		tHS	cWW
3	IL_3J7A_006	3J7A	0.4650	1		A	SSU rRNA	U	64	A	65	A	67	U	68	*	A	84	G	85	A	86	A	87	A	88	cWW		tHS	cWW
4	IL_3U5F_007	3U5F	0.4376	2		6	18S rRNA	U	64	A	65	A	67	G	69	*	U	82	G	83	A	84	A	85	A	86	cWW		tHS	cWW
5	IL_4CUX_007	4CUX	0.4420	2		2	18S RRNA	U	64	A	65	A	67	G	69	*	U	82	G	83	A	84	A	85	A	86	cWW		ntHS	ncWW
6	IL_1GID_003	1GID	0.3005	0		A	P4-P6 RNA RIBOZYME DOMAIN	U	205	A	206	A	207	C	208	*	G	112	A	113	A	114	A	115	G	116	ncWW	tSH	tHS	cWW
7	IL_1GID_010	1GID	0.2771	0		B	P4-P6 RNA RIBOZYME DOMAIN	U	205	A	206	A	207	C	208	*	G	112	A	113	A	114	A	115	G	116	cWW	tSH	tHS	cWW
8	IL_1X8W_002	1X8W	0.2701	0		A	Tetrahymena ribozyme RNA	U	205	A	206	A	207	C	208	*	G	112	A	113	A	114	A	115	G	116	ncWW		tHS	cWW
9	IL_4A1B_022	4A1B	0.2513	0		1	26S RRNA	U	499	G	500	A	501	G	502	*	C	475	A	476	G	477	A	478	G	479	cWW	tSH	ntHS	cWW
10	IL_4A1B_026	4A1B	0.1468	0		1	26S RRNA	U	571	G	572	A	573	G	574	*	C	594	A	595	A	596	A	597	A	598	cWW	ntSH	tHS	cWW
11	IL_4FAW_010	4FAW	0.0000	0		A	Group II catalytic intron D1-D4-3	U	172	G	173	A	174	G	175	*	C	190	A	191	A	192	A	193	G	194	cWW	tSH	tHS	cWW
12	IL_3FTM_001	3FTM	0.3121	0		A+B	RNA (11-mer) + RNA (12-mer)	U	46	G	47	A	48	G	49	*	C	-1	G	1	G	2	A	3	A	4	cWW		ntHS	cWW
13	IL_3FS0_001	3FS0	0.4073	0	UAA/GAN related	A+B	RNA (10-mer) + RNA (11-mer)	U	46	G	47	A	48	G	49	*	C	-1	G	1	G	2	A	3	A	4	cWW	nthH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAC*GAAAG	3
UAUAAG*UGAAA	2
UGAG*CGGAA	2
UACAG*CGAAG	1
UAAAUA*UGAAG	1
UAUAU*AGAAA	1
UGAG*CAGAG	1
UGAG*CAAAA	1
UGAG*CAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*AAA	3
AUAA*GAA	2
GA*AAA	2
GA*GGA	2
ACA*GAA	1
AAAU*GAA	1
AUA*GAA	1
GA*AGA	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_31555.7	Only in the parent motif
IL_31555.6 Compare	IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_4A1B_120, IL_1GID_003, IL_4FAW_010	IL_3J7A_006, IL_3U5F_007, IL_4CUX_007, IL_1VX6_125	IL_3LOA_001, IL_3BNT_005, IL_3BNQ_002, IL_3BNT_002
IL_21427.1 Compare	IL_3U5F_007, IL_4CUX_007	IL_1VX6_125, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_4A1B_120, IL_1GID_003, IL_4FAW_010, IL_3J7A_006	IL_4CUV_104, IL_4BPP_007, IL_2QBG_075

Children motifs

Child motif	Common motif instances	Only in IL_31555.7	Only in the child motif
IL_31555.8 Compare	IL_1X8W_002, IL_1VX6_125, IL_4A1B_026, IL_3J7A_006, IL_3U5F_007, IL_4CUX_007, IL_4A1B_022, IL_3FS0_001, IL_1GID_003, IL_3FTM_001, IL_4A1B_120, IL_1GID_010, IL_4FAW_010		IL_4W23_006, IL_4W21_004

Annotations: (12)
UAA/GAN related (1)
Basepair signature: cWW-R-tSH-tHS-cWW
Heat map statistics: Min 0.15 | Avg 0.38 | Max 0.60

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Coloring options: Nucleotide numbers

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