RNA 3D Hub //

Motif IL_31555.6 Version IL_31555.6 of this group appears in releases 1.14 to 1.15

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 8 91-92-72-83-64-5
1 IL_3BNQ_0023BNQ0.84000A+BA site of human mitochondrial ribosome, A chainC7A8C9C10*G15C16A17A18G19cWWcwWncBWcWW
2 IL_3BNT_0053BNT0.77430Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6||||4_665A7||||4_665C8||||4_665C9||||4_665*G14C15A16A17G18cWWcwWncBWcWW
3 IL_3BNT_0023BNT0.77420Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6A7C8C9*G14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665cWWcwWncBWcWW
4 IL_3LOA_0013LOA0.68050UAA/GAN relatedA+BRNA (21-mer) + RNA (23-mer)G1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWncWWcWW
5 IL_1GID_0031GID0.30050AP4-P6 RNA RIBOZYME DOMAINU205A206A207C208*G112A113A114A115G116ncWWtSHtHScWW
6 IL_1GID_0101GID0.27710BP4-P6 RNA RIBOZYME DOMAINU205A206A207C208*G112A113A114A115G116cWWtSHtHScWW
7 IL_1X8W_0021X8W0.27010ATetrahymena ribozyme RNAU205A206A207C208*G112A113A114A115G116ncWWtHScWW
8 IL_4A1B_0224A1B0.25130126S RRNAU499G500A501G502*C475A476G477A478G479cWWtSHntHScWW
9 IL_4A1B_0264A1B0.14680126S RRNAU571G572A573G574*C594A595A596A597A598cWWntSHtHScWW
10 IL_4FAW_0104FAW0.00000AGroup II catalytic intron D1-D4-3U172G173A174G175*C190A191A192A193G194cWWtSHtHScWW
11 IL_3FTM_0013FTM0.31210A+BRNA (11-mer) + RNA (12-mer)U46G47A48G49*C-1G1G2A3A4cWWntHScWW
12 IL_4A1B_1204A1B0.36552126S RRNAU3043A3044A3046A3048*U3073G3074A3075A3076G3077cWWtHScWW
13 IL_3FS0_0013FS00.40730UAA/GAN relatedA+BRNA (10-mer) + RNA (11-mer)U46G47A48G49*C-1G1G2A3A4cWWnthHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CACC*GCAAG3
UAAC*GAAAG3
UGAG*CGGAA2
GCCC*GUAAC1
UGAG*CAGAG1
UGAG*CAAAA1
UGAG*CAAAG1
UAAAUA*UGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
AC*CAA3
AA*AAA3
GA*AAA2
GA*GGA2
CC*UAA1
GA*AGA1
AAAU*GAA1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusUpdated, 2 parentsExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_31555.6Only in the child motif
IL_31555.7
Compare		IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_4A1B_120, IL_1GID_003, IL_4FAW_010IL_3LOA_001, IL_3BNT_005, IL_3BNQ_002, IL_3BNT_002IL_3J7A_006, IL_3U5F_007, IL_4CUX_007, IL_1VX6_125
IL_19986.1
Compare		IL_3LOA_001, IL_3BNT_005, IL_3BNT_002IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_3BNQ_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010IL_1VX2_073, IL_4BPP_081, IL_1VX6_136, IL_4CUX_082, IL_3J7A_071, IL_2O3V_002, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055
IL_77920.1
Compare		IL_3BNQ_002IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_1NUV_003, IL_2QBG_108
Annotations
  • (9)
  • Tandem non-canonical cWW pairs (2)
  • UAA/GAN related (2)
    • Basepair signature
    cWW-cWW-tSH-tHS-cWW
    Heat map statistics
    Min 0.00 | Avg 0.50 | Max 0.91
    Help

    Coloring options:

    IL_3BNQ_002:IL_3BNQ_002 = 0IL_3BNQ_002:IL_3BNT_005 = 0.2091IL_3BNQ_002:IL_3BNT_002 = 0.2091IL_3BNQ_002:IL_3LOA_001 = 0.4796IL_3BNQ_002:IL_1GID_003 = 0.9077IL_3BNQ_002:IL_1GID_010 = 0.7998IL_3BNQ_002:IL_1X8W_002 = 0.8244IL_3BNQ_002:IL_4A1B_022 = 0.8139IL_3BNQ_002:IL_4A1B_026 = 0.8404IL_3BNQ_002:IL_4FAW_010 = 0.84IL_3BNQ_002:IL_3FTM_001 = 0.8635IL_3BNQ_002:IL_4A1B_120 = 0.9097IL_3BNQ_002:IL_3FS0_001 = 0.9041IL_3BNT_005:IL_3BNQ_002 = 0.2091IL_3BNT_005:IL_3BNT_005 = 0IL_3BNT_005:IL_3BNT_002 = 0.0001IL_3BNT_005:IL_3LOA_001 = 0.3442IL_3BNT_005:IL_1GID_003 = 0.8536IL_3BNT_005:IL_1GID_010 = 0.7412IL_3BNT_005:IL_1X8W_002 = 0.7591IL_3BNT_005:IL_4A1B_022 = 0.7368IL_3BNT_005:IL_4A1B_026 = 0.777IL_3BNT_005:IL_4FAW_010 = 0.7743IL_3BNT_005:IL_3FTM_001 = 0.7932IL_3BNT_005:IL_4A1B_120 = 0.8658IL_3BNT_005:IL_3FS0_001 = 0.8452IL_3BNT_002:IL_3BNQ_002 = 0.2091IL_3BNT_002:IL_3BNT_005 = 0.0001IL_3BNT_002:IL_3BNT_002 = 0IL_3BNT_002:IL_3LOA_001 = 0.3442IL_3BNT_002:IL_1GID_003 = 0.8536IL_3BNT_002:IL_1GID_010 = 0.7412IL_3BNT_002:IL_1X8W_002 = 0.759IL_3BNT_002:IL_4A1B_022 = 0.7368IL_3BNT_002:IL_4A1B_026 = 0.777IL_3BNT_002:IL_4FAW_010 = 0.7742IL_3BNT_002:IL_3FTM_001 = 0.7932IL_3BNT_002:IL_4A1B_120 = 0.8658IL_3BNT_002:IL_3FS0_001 = 0.8452IL_3LOA_001:IL_3BNQ_002 = 0.4796IL_3LOA_001:IL_3BNT_005 = 0.3442IL_3LOA_001:IL_3BNT_002 = 0.3442IL_3LOA_001:IL_3LOA_001 = 0IL_3LOA_001:IL_1GID_003 = 0.7512IL_3LOA_001:IL_1GID_010 = 0.6577IL_3LOA_001:IL_1X8W_002 = 0.6768IL_3LOA_001:IL_4A1B_022 = 0.6513IL_3LOA_001:IL_4A1B_026 = 0.7005IL_3LOA_001:IL_4FAW_010 = 0.6805IL_3LOA_001:IL_3FTM_001 = 0.6995IL_3LOA_001:IL_4A1B_120 = 0.8305IL_3LOA_001:IL_3FS0_001 = 0.7755IL_1GID_003:IL_3BNQ_002 = 0.9077IL_1GID_003:IL_3BNT_005 = 0.8536IL_1GID_003:IL_3BNT_002 = 0.8536IL_1GID_003:IL_3LOA_001 = 0.7512IL_1GID_003:IL_1GID_003 = 0IL_1GID_003:IL_1GID_010 = 0.2029IL_1GID_003:IL_1X8W_002 = 0.2171IL_1GID_003:IL_4A1B_022 = 0.3067IL_1GID_003:IL_4A1B_026 = 0.3038IL_1GID_003:IL_4FAW_010 = 0.3005IL_1GID_003:IL_3FTM_001 = 0.4632IL_1GID_003:IL_4A1B_120 = 0.4408IL_1GID_003:IL_3FS0_001 = 0.5263IL_1GID_010:IL_3BNQ_002 = 0.7998IL_1GID_010:IL_3BNT_005 = 0.7412IL_1GID_010:IL_3BNT_002 = 0.7412IL_1GID_010:IL_3LOA_001 = 0.6577IL_1GID_010:IL_1GID_003 = 0.2029IL_1GID_010:IL_1GID_010 = 0IL_1GID_010:IL_1X8W_002 = 0.1925IL_1GID_010:IL_4A1B_022 = 0.2426IL_1GID_010:IL_4A1B_026 = 0.2597IL_1GID_010:IL_4FAW_010 = 0.2771IL_1GID_010:IL_3FTM_001 = 0.4544IL_1GID_010:IL_4A1B_120 = 0.4085IL_1GID_010:IL_3FS0_001 = 0.511IL_1X8W_002:IL_3BNQ_002 = 0.8244IL_1X8W_002:IL_3BNT_005 = 0.7591IL_1X8W_002:IL_3BNT_002 = 0.759IL_1X8W_002:IL_3LOA_001 = 0.6768IL_1X8W_002:IL_1GID_003 = 0.2171IL_1X8W_002:IL_1GID_010 = 0.1925IL_1X8W_002:IL_1X8W_002 = 0IL_1X8W_002:IL_4A1B_022 = 0.2579IL_1X8W_002:IL_4A1B_026 = 0.2612IL_1X8W_002:IL_4FAW_010 = 0.2701IL_1X8W_002:IL_3FTM_001 = 0.3981IL_1X8W_002:IL_4A1B_120 = 0.3894IL_1X8W_002:IL_3FS0_001 = 0.4681IL_4A1B_022:IL_3BNQ_002 = 0.8139IL_4A1B_022:IL_3BNT_005 = 0.7368IL_4A1B_022:IL_3BNT_002 = 0.7368IL_4A1B_022:IL_3LOA_001 = 0.6513IL_4A1B_022:IL_1GID_003 = 0.3067IL_4A1B_022:IL_1GID_010 = 0.2426IL_4A1B_022:IL_1X8W_002 = 0.2579IL_4A1B_022:IL_4A1B_022 = 0IL_4A1B_022:IL_4A1B_026 = 0.2215IL_4A1B_022:IL_4FAW_010 = 0.2513IL_4A1B_022:IL_3FTM_001 = 0.4137IL_4A1B_022:IL_4A1B_120 = 0.3915IL_4A1B_022:IL_3FS0_001 = 0.4295IL_4A1B_026:IL_3BNQ_002 = 0.8404IL_4A1B_026:IL_3BNT_005 = 0.777IL_4A1B_026:IL_3BNT_002 = 0.777IL_4A1B_026:IL_3LOA_001 = 0.7005IL_4A1B_026:IL_1GID_003 = 0.3038IL_4A1B_026:IL_1GID_010 = 0.2597IL_4A1B_026:IL_1X8W_002 = 0.2612IL_4A1B_026:IL_4A1B_022 = 0.2215IL_4A1B_026:IL_4A1B_026 = 0IL_4A1B_026:IL_4FAW_010 = 0.1468IL_4A1B_026:IL_3FTM_001 = 0.3347IL_4A1B_026:IL_4A1B_120 = 0.3833IL_4A1B_026:IL_3FS0_001 = 0.4169IL_4FAW_010:IL_3BNQ_002 = 0.84IL_4FAW_010:IL_3BNT_005 = 0.7743IL_4FAW_010:IL_3BNT_002 = 0.7742IL_4FAW_010:IL_3LOA_001 = 0.6805IL_4FAW_010:IL_1GID_003 = 0.3005IL_4FAW_010:IL_1GID_010 = 0.2771IL_4FAW_010:IL_1X8W_002 = 0.2701IL_4FAW_010:IL_4A1B_022 = 0.2513IL_4FAW_010:IL_4A1B_026 = 0.1468IL_4FAW_010:IL_4FAW_010 = 0IL_4FAW_010:IL_3FTM_001 = 0.3121IL_4FAW_010:IL_4A1B_120 = 0.3655IL_4FAW_010:IL_3FS0_001 = 0.4073IL_3FTM_001:IL_3BNQ_002 = 0.8635IL_3FTM_001:IL_3BNT_005 = 0.7932IL_3FTM_001:IL_3BNT_002 = 0.7932IL_3FTM_001:IL_3LOA_001 = 0.6995IL_3FTM_001:IL_1GID_003 = 0.4632IL_3FTM_001:IL_1GID_010 = 0.4544IL_3FTM_001:IL_1X8W_002 = 0.3981IL_3FTM_001:IL_4A1B_022 = 0.4137IL_3FTM_001:IL_4A1B_026 = 0.3347IL_3FTM_001:IL_4FAW_010 = 0.3121IL_3FTM_001:IL_3FTM_001 = 0IL_3FTM_001:IL_4A1B_120 = 0.4347IL_3FTM_001:IL_3FS0_001 = 0.4392IL_4A1B_120:IL_3BNQ_002 = 0.9097IL_4A1B_120:IL_3BNT_005 = 0.8658IL_4A1B_120:IL_3BNT_002 = 0.8658IL_4A1B_120:IL_3LOA_001 = 0.8305IL_4A1B_120:IL_1GID_003 = 0.4408IL_4A1B_120:IL_1GID_010 = 0.4085IL_4A1B_120:IL_1X8W_002 = 0.3894IL_4A1B_120:IL_4A1B_022 = 0.3915IL_4A1B_120:IL_4A1B_026 = 0.3833IL_4A1B_120:IL_4FAW_010 = 0.3655IL_4A1B_120:IL_3FTM_001 = 0.4347IL_4A1B_120:IL_4A1B_120 = 0IL_4A1B_120:IL_3FS0_001 = 0.4867IL_3FS0_001:IL_3BNQ_002 = 0.9041IL_3FS0_001:IL_3BNT_005 = 0.8452IL_3FS0_001:IL_3BNT_002 = 0.8452IL_3FS0_001:IL_3LOA_001 = 0.7755IL_3FS0_001:IL_1GID_003 = 0.5263IL_3FS0_001:IL_1GID_010 = 0.511IL_3FS0_001:IL_1X8W_002 = 0.4681IL_3FS0_001:IL_4A1B_022 = 0.4295IL_3FS0_001:IL_4A1B_026 = 0.4169IL_3FS0_001:IL_4FAW_010 = 0.4073IL_3FS0_001:IL_3FTM_001 = 0.4392IL_3FS0_001:IL_4A1B_120 = 0.4867IL_3FS0_001:IL_3FS0_001 = 0IL_3BNQ_002IL_3BNT_005IL_3BNT_002IL_3LOA_001IL_1GID_003IL_1GID_010IL_1X8W_002IL_4A1B_022IL_4A1B_026IL_4FAW_010IL_3FTM_001IL_4A1B_120IL_3FS0_001Discrepancy0.000.200.400.600.80
    Copyright 2025 BGSU RNA group. Page generated in 1.6801 s
    Application loaded.