Motif IL_31555.6 Version IL_31555.6 of this group appears in releases 1.14 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNQ_002 | 3BNQ | 0.8400 | 0 | A+B | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | A | 18 | G | 19 | cWW | cwW | ncBW | cWW | ||
| 2 | IL_3BNT_005 | 3BNT | 0.7743 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | C | 6||||4_665 | A | 7||||4_665 | C | 8||||4_665 | C | 9||||4_665 | * | G | 14 | C | 15 | A | 16 | A | 17 | G | 18 | cWW | cwW | ncBW | cWW | |
| 3 | IL_3BNT_002 | 3BNT | 0.7742 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 14||||4_665 | C | 15||||4_665 | A | 16||||4_665 | A | 17||||4_665 | G | 18||||4_665 | cWW | cwW | ncBW | cWW | |
| 4 | IL_3LOA_001 | 3LOA | 0.6805 | 0 | UAA/GAN related | A+B | RNA (21-mer) + RNA (23-mer) | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | ncWW | cWW | ||
| 5 | IL_1GID_003 | 1GID | 0.3005 | 0 | A | P4-P6 RNA RIBOZYME DOMAIN | U | 205 | A | 206 | A | 207 | C | 208 | * | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | ncWW | tSH | tHS | cWW | ||
| 6 | IL_1GID_010 | 1GID | 0.2771 | 0 | B | P4-P6 RNA RIBOZYME DOMAIN | U | 205 | A | 206 | A | 207 | C | 208 | * | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | cWW | tSH | tHS | cWW | ||
| 7 | IL_1X8W_002 | 1X8W | 0.2701 | 0 | A | Tetrahymena ribozyme RNA | U | 205 | A | 206 | A | 207 | C | 208 | * | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | ncWW | tHS | cWW | |||
| 8 | IL_4A1B_022 | 4A1B | 0.2513 | 0 | 1 | 26S RRNA | U | 499 | G | 500 | A | 501 | G | 502 | * | C | 475 | A | 476 | G | 477 | A | 478 | G | 479 | cWW | tSH | ntHS | cWW | ||
| 9 | IL_4A1B_026 | 4A1B | 0.1468 | 0 | 1 | 26S RRNA | U | 571 | G | 572 | A | 573 | G | 574 | * | C | 594 | A | 595 | A | 596 | A | 597 | A | 598 | cWW | ntSH | tHS | cWW | ||
| 10 | IL_4FAW_010 | 4FAW | 0.0000 | 0 | A | Group II catalytic intron D1-D4-3 | U | 172 | G | 173 | A | 174 | G | 175 | * | C | 190 | A | 191 | A | 192 | A | 193 | G | 194 | cWW | tSH | tHS | cWW | ||
| 11 | IL_3FTM_001 | 3FTM | 0.3121 | 0 | A+B | RNA (11-mer) + RNA (12-mer) | U | 46 | G | 47 | A | 48 | G | 49 | * | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | cWW | ntHS | cWW | |||
| 12 | IL_4A1B_120 | 4A1B | 0.3655 | 2 | 1 | 26S RRNA | U | 3043 | A | 3044 | A | 3046 | A | 3048 | * | U | 3073 | G | 3074 | A | 3075 | A | 3076 | G | 3077 | cWW | tHS | cWW | |||
| 13 | IL_3FS0_001 | 3FS0 | 0.4073 | 0 | UAA/GAN related | A+B | RNA (10-mer) + RNA (11-mer) | U | 46 | G | 47 | A | 48 | G | 49 | * | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | cWW | nthH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 3 |
| UAAC*GAAAG | 3 |
| UGAG*CGGAA | 2 |
| GCCC*GUAAC | 1 |
| UGAG*CAGAG | 1 |
| UGAG*CAAAA | 1 |
| UGAG*CAAAG | 1 |
| UAAAUA*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 3 |
| AA*AAA | 3 |
| GA*AAA | 2 |
| GA*GGA | 2 |
| CC*UAA | 1 |
| GA*AGA | 1 |
| AAAU*GAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_31555.6 | Only in the parent motif |
|---|---|---|---|
| IL_31555.5 Compare | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 | IL_3BNQ_002 | IL_3CUN_001 |
| IL_46301.1 Compare | IL_3BNQ_002 | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 | IL_1NUV_003, IL_1NUV_002, IL_429D_002, IL_2QBG_108, IL_2AW7_010, IL_1FJG_008 |
Children motifs
| Child motif | Common motif instances | Only in IL_31555.6 | Only in the child motif |
|---|---|---|---|
| IL_31555.7 Compare | IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 | IL_3LOA_001, IL_3BNT_005, IL_3BNQ_002, IL_3BNT_002 | IL_3J7A_006, IL_3U5F_007, IL_4CUX_007, IL_1VX6_125 |
| IL_19986.1 Compare | IL_3LOA_001, IL_3BNT_005, IL_3BNT_002 | IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_3BNQ_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 | IL_1VX2_073, IL_4BPP_081, IL_1VX6_136, IL_4CUX_082, IL_3J7A_071, IL_2O3V_002, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055 |
| IL_77920.1 Compare | IL_3BNQ_002 | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 | IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_1NUV_003, IL_2QBG_108 |
- Annotations
-
- (9)
- Tandem non-canonical cWW pairs (2)
- UAA/GAN related (2)
- Basepair signature
- cWW-cWW-tSH-tHS-cWW
- Heat map statistics
- Min 0.00 | Avg 0.50 | Max 0.91
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